We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TBCB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TBCB
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:64.7 nTPM
HPA:34.3 nTPM
GTEx:64.7 nTPM
FANTOM5:41.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041428Antibody HPA041722
Glandular cells MediumNot detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.3
overview
Male, age 65
Small intestine sample 232
nTPM: 29.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 35.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 35.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 36.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 64.7
Samples: 187

Max nTPM: 122.1
Min nTPM: 36.6
Std nTPM: 18.3
Median nTPM: 60.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 122.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 120.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 119.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 117.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 117.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 117.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 115.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 107.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 101.0
GTEX-1192X-2526-SM-59868 50-59 years, male 100.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 100.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 99.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 99.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 99.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 98.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 98.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 96.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 95.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 94.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 94.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 90.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 90.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 88.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 87.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 84.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 83.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 83.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 83.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 82.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 80.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 80.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 80.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 78.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 77.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 77.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 77.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 76.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 76.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 76.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 75.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 74.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 74.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 73.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 73.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 73.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 73.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 72.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 72.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 71.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 71.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 71.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 71.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 70.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 70.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 70.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 69.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 69.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 69.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 68.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 67.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 66.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 66.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 66.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 66.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 65.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 65.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 65.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 65.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 65.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 64.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 64.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 64.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 64.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 64.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 64.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 64.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 64.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 63.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 63.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 63.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 63.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 62.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 62.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 62.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 62.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 62.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 62.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 61.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 61.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 60.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 60.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 60.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 60.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 60.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 60.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 60.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 60.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 60.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 59.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 59.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 59.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 59.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 59.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 58.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 58.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 58.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 58.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 57.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 57.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 57.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 57.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 57.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 57.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 57.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 56.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 55.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 55.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 55.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 55.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 55.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 55.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 55.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 55.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 54.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 54.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 54.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 54.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 54.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 54.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 53.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 53.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 53.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 53.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 52.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 52.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 52.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 52.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 51.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 51.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 51.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 51.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 51.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 51.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 51.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 50.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 50.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 50.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 50.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 50.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 50.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 50.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 49.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 49.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 49.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 49.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 48.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 48.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 48.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 48.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 48.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 48.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 48.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 47.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 47.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 47.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 47.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 47.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 46.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 46.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 46.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 46.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 45.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 45.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 45.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 44.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 44.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 44.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 43.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 43.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 42.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 41.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 41.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 40.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 38.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 37.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 37.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 36.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 41.4
FF:10024-101D6 15,40,85 years, mixed 41.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org