MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:118.1 nTPM
HPA Brain:397.3 nTPM
GTEx:118.1 nTPM
FANTOM5:142.2 Scaled Tags Per Million
Pig:228.4 nTPM
Mouse:276.8 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 397.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 233.3
2219 Male, age 76, both hemispheres 322.0
2586 Male, age 75, left hemisphere 311.8
2666 Male, age 74, left hemisphere 267.1
1827 Male, age 72, unknown 252.3
2828 Female, age 72, unknown 233.2
1833 Male, age 53, unknown 210.4
1870 Female, age 42, unknown 202.3
2411 Female, age 72, unknown 201.6
1830 Male, age 51, unknown 171.5
2019 Male, age 18, unknown 160.4
Dorsal raphe nucleus
nTPM: 240.8
2047 Male, age 72, unknown 303.7
2298 Female, age 72, unknown 267.4
2750 Male, age 76, both hemispheres 255.6
1828 Male, age 53, unknown 214.7
2016 Female, age 72, unknown 162.7
Inferior colliculus
nTPM: 198.6
2849 Male, age 72, unknown 225.1
1890 Male, age 53, unknown 196.7
1848 Female, age 42, unknown 196.5
2097 Female, age 72, unknown 176.3
Median raphe nucleus
nTPM: 397.3
2220 Male, age 76, midline 397.3
Periaquaductal grey, anterior
nTPM: 233.4
1947 Male, age 18, unknown 252.4
1795 Male, age 51, unknown 248.7
2502 Female, age 75, unknown 199.2
Periaquaductal grey, dorsal
nTPM: 209.5
2850 Male, age 76, both hemispheres 247.9
1840 Male, age 53, unknown 222.5
1831 Male, age 72, unknown 202.0
2464 Female, age 72, unknown 165.6
Periaquaductal grey, lateral
nTPM: 171.2
2053 Male, age 18, unknown 185.2
2140 Male, age 76, both hemispheres 183.8
2272 Male, age 74, both hemispheres 144.5
Pretectal area
nTPM: 230.0
1816 Male, age 51, unknown 294.8
1944 Female, age 72, unknown 263.0
2667 Female, age 75, unknown 258.4
1815 Male, age 53, unknown 257.2
2007 Male, age 72, unknown 253.1
1817 Female, age 42, unknown 242.9
2407 Male, age 75, both hemispheres 228.2
2825 Male, age 18, unknown 217.6
2224 Female, age 72, unknown 215.8
2316 Male, age 76, right hemisphere 150.4
2273 Male, age 74, both hemispheres 148.1
Red nucleus
nTPM: 177.1
2584 Male, age 75, left hemisphere 243.3
2725 Female, age 75, unknown 192.8
1821 Female, age 72, unknown 185.4
2785 Male, age 18, unknown 178.5
2823 Male, age 76, right hemisphere 172.4
1954 Female, age 42, unknown 168.2
1865 Male, age 51, unknown 168.0
1904 Male, age 53, unknown 166.4
2588 Male, age 74, left hemisphere 164.5
2503 Female, age 72, unknown 162.8
2769 Male, age 72, unknown 162.4
2227 Male, age 72, unknown 160.5
Substantia nigra
nTPM: 294.3
1916 Female, age 42, unknown 459.0
1851 Male, age 51, unknown 342.5
2699 Male, age 18, unknown 328.8
1941 Male, age 53, unknown 293.3
2665 Male, age 74, both hemispheres 282.7
2241 Male, age 72, unknown 282.4
1889 Female, age 72, unknown 275.3
2583 Male, age 75, right hemisphere 250.1
2409 Female, age 72, unknown 223.7
2590 Female, age 75, unknown 205.7
Superior colliculus
nTPM: 218.9
2668 Female, age 75, unknown 277.8
1796 Male, age 53, unknown 276.1
2664 Male, age 75, both hemispheres 268.6
2087 Female, age 72, unknown 233.4
2261 Male, age 18, unknown 229.1
1895 Male, age 76, right hemisphere 200.8
1839 Male, age 51, unknown 190.8
2587 Male, age 74, left hemisphere 184.6
1913 Female, age 42, unknown 182.3
1995 Male, age 72, unknown 145.4
Ventral tegmental area
nTPM: 269.3
2218 Male, age 76, both hemispheres 343.0
1915 Female, age 42, unknown 313.9
2410 Female, age 72, unknown 263.4
1942 Male, age 51, unknown 248.1
2223 Female, age 72, unknown 239.3
2021 Male, age 53, unknown 208.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 118.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.1
Samples: 139

Max nTPM: 342.6
Min nTPM: 48.2
Std nTPM: 53.1
Median nTPM: 99.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 342.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 262.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 261.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 246.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 243.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 239.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 238.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 229.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 225.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 217.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 208.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 142.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.2
FF:10158-103A5 76 years, female 142.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 228.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 223.8
Samples: 4

Max nTPM: 301.8
Min nTPM: 152.3
Sample A Female 262.7
Sample B Female 152.3
Sample C Male 301.8
Sample D Male 178.5
Midbrain
nTPM: 228.4
Samples: 4

Max nTPM: 275.3
Min nTPM: 187.7
Sample A Female 250.0
Sample B Female 187.7
Sample C Male 275.3
Sample D Male 200.6
Periaqueductal gray
nTPM: 182.5
Samples: 3

Max nTPM: 219.1
Min nTPM: 155.4
Sample B Female 173.0
Sample C Male 219.1
Sample D Male 155.4
Superior colliculi
nTPM: 199.3
Samples: 4

Max nTPM: 249.1
Min nTPM: 91.0
Sample A Female 216.0
Sample B Female 91.0
Sample C Male 249.1
Sample D Male 241.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 276.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 276.8
Samples: 4

Max nTPM: 291.0
Min nTPM: 260.3
Sample A Male 275.6
Sample B Male 260.3
Sample C Female 291.0
Sample D Female 280.1

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