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CD79A
HPA
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  • CD79A
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.2 nTPM
HPA:34.1 nTPM
GTEx:148.2 nTPM
FANTOM5:44.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA056444Antibody CAB000019
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -Not detected
Glandular cells Not detected-
Goblet cells -Not detected
Paneth cells -Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.1
overview
Male, age 65
Small intestine sample 232
nTPM: 43.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 44.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 29
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 18.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 148.2
Samples: 187

Max nTPM: 626.0
Min nTPM: 0.0
Std nTPM: 160.6
Median nTPM: 72.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 626.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 579.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 574.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 501.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 500.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 477.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 469.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 455.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 453.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 453.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 451.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 447.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 441.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 431.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 425.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 418.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 416.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 415.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 414.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 404.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 404.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 404.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 404.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 399.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 392.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 389.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 367.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 366.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 364.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 359.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 358.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 349.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 344.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 335.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 334.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 325.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 308.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 306.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 306.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 299.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 295.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 286.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 280.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 280.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 273.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 270.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 270.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 263.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 262.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 262.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 255.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 252.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 236.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 234.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 221.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 218.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 205.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 202.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 200.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 199.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 192.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 182.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 181.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 181.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 174.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 173.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 166.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 165.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 162.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 159.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 148.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 144.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 140.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 135.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 134.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 126.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 126.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 124.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 118.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 115.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 111.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 106.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 104.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 104.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 96.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 96.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 91.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 86.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 82.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 79.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 76.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 75.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 75.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 72.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 70.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 64.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 64.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 63.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 62.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 60.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 56.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 52.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 51.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 50.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 50.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 48.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 47.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 46.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 43.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 41.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 40.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 40.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 39.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 38.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 37.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 36.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 35.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 32.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 32.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 31.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 29.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 28.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 28.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 28.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 26.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 26.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 25.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 24.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 22.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 22.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 22.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 21.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 21.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 20.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 19.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 17.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 17.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 16.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 15.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 14.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 12.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 12.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 12.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 11.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 11.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 11.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 10.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 10.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 9.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 9.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 9.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 8.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 8.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 8.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 8.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 8.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 7.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 7.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 7.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 6.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 6.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 6.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 5.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 5.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 4.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 4.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 3.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 3.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 3.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.8
GTEX-1192X-2526-SM-59868 50-59 years, male 1.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 0.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 0.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 44.7
FF:10024-101D6 15,40,85 years, mixed 44.7

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