MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:176.7 nTPM
HPA Brain:95.5 nTPM
GTEx:176.7 nTPM
FANTOM5:75.6 Scaled Tags Per Million
Pig:117.4 nTPM
Mouse:81.3 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.4
2019 Male, age 18, unknown 98.4
2411 Female, age 72, unknown 90.0
1827 Male, age 72, unknown 88.2
2828 Female, age 72, unknown 88.0
2586 Male, age 75, left hemisphere 86.9
1870 Female, age 42, unknown 85.6
2666 Male, age 74, left hemisphere 76.6
1833 Male, age 53, unknown 75.1
2219 Male, age 76, both hemispheres 70.0
1830 Male, age 51, unknown 64.7
Dorsal raphe nucleus
nTPM: 77.4
1828 Male, age 53, unknown 88.6
2750 Male, age 76, both hemispheres 85.5
2298 Female, age 72, unknown 76.1
2047 Male, age 72, unknown 69.3
2016 Female, age 72, unknown 67.7
Inferior colliculus
nTPM: 70.2
1890 Male, age 53, unknown 79.8
2097 Female, age 72, unknown 77.9
1848 Female, age 42, unknown 64.5
2849 Male, age 72, unknown 58.6
Median raphe nucleus
nTPM: 75.2
2220 Male, age 76, midline 75.2
Periaquaductal grey, anterior
nTPM: 76.8
1795 Male, age 51, unknown 81.1
1947 Male, age 18, unknown 74.8
2502 Female, age 75, unknown 74.3
Periaquaductal grey, dorsal
nTPM: 63.2
1831 Male, age 72, unknown 73.7
2464 Female, age 72, unknown 67.3
1840 Male, age 53, unknown 57.9
2850 Male, age 76, both hemispheres 53.8
Periaquaductal grey, lateral
nTPM: 61.0
2272 Male, age 74, both hemispheres 63.1
2053 Male, age 18, unknown 61.4
2140 Male, age 76, both hemispheres 58.7
Pretectal area
nTPM: 84.3
2007 Male, age 72, unknown 110.4
1816 Male, age 51, unknown 109.5
1817 Female, age 42, unknown 107.3
1944 Female, age 72, unknown 101.9
1815 Male, age 53, unknown 90.3
2667 Female, age 75, unknown 88.4
2316 Male, age 76, right hemisphere 68.0
2273 Male, age 74, both hemispheres 66.4
2224 Female, age 72, unknown 66.2
2825 Male, age 18, unknown 63.3
2407 Male, age 75, both hemispheres 55.4
Red nucleus
nTPM: 95.5
2503 Female, age 72, unknown 114.1
2588 Male, age 74, left hemisphere 101.9
1821 Female, age 72, unknown 100.1
2785 Male, age 18, unknown 98.4
1954 Female, age 42, unknown 98.2
1904 Male, age 53, unknown 94.2
2769 Male, age 72, unknown 93.8
1865 Male, age 51, unknown 93.7
2227 Male, age 72, unknown 91.4
2823 Male, age 76, right hemisphere 91.1
2725 Female, age 75, unknown 90.8
2584 Male, age 75, left hemisphere 77.9
Substantia nigra
nTPM: 82.7
1851 Male, age 51, unknown 99.8
1916 Female, age 42, unknown 99.2
1889 Female, age 72, unknown 96.2
2699 Male, age 18, unknown 81.4
2409 Female, age 72, unknown 80.9
2665 Male, age 74, both hemispheres 79.2
1941 Male, age 53, unknown 78.7
2590 Female, age 75, unknown 73.3
2583 Male, age 75, right hemisphere 70.2
2241 Male, age 72, unknown 68.1
Superior colliculus
nTPM: 78.7
2087 Female, age 72, unknown 96.4
1913 Female, age 42, unknown 90.2
2668 Female, age 75, unknown 87.3
1796 Male, age 53, unknown 84.0
2261 Male, age 18, unknown 83.1
1995 Male, age 72, unknown 76.4
1895 Male, age 76, right hemisphere 74.6
2587 Male, age 74, left hemisphere 71.8
2664 Male, age 75, both hemispheres 64.1
1839 Male, age 51, unknown 59.4
Ventral tegmental area
nTPM: 81.6
1915 Female, age 42, unknown 92.0
2410 Female, age 72, unknown 88.0
2223 Female, age 72, unknown 83.9
2218 Male, age 76, both hemispheres 82.6
1942 Male, age 51, unknown 79.2
2021 Male, age 53, unknown 64.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 176.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 176.7
Samples: 139

Max nTPM: 419.0
Min nTPM: 69.3
Std nTPM: 47.4
Median nTPM: 167.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 419.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 403.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 293.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 282.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 280.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 280.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 277.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 258.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 248.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 246.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 231.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.6
FF:10158-103A5 76 years, female 75.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 117.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 113.5
Samples: 4

Max nTPM: 143.5
Min nTPM: 90.2
Sample A Female 143.5
Sample B Female 90.2
Sample C Male 125.5
Sample D Male 94.6
Midbrain
nTPM: 117.4
Samples: 4

Max nTPM: 160.9
Min nTPM: 77.0
Sample A Female 160.9
Sample B Female 122.7
Sample C Male 109.1
Sample D Male 77.0
Periaqueductal gray
nTPM: 98.9
Samples: 3

Max nTPM: 110.0
Min nTPM: 82.3
Sample B Female 104.3
Sample C Male 110.0
Sample D Male 82.3
Superior colliculi
nTPM: 116.3
Samples: 4

Max nTPM: 132.6
Min nTPM: 101.7
Sample A Female 132.6
Sample B Female 106.6
Sample C Male 124.3
Sample D Male 101.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 81.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.4
Samples: 4

Max nTPM: 94.4
Min nTPM: 70.1
Sample A Male 94.4
Sample B Male 70.1
Sample C Female 73.9
Sample D Female 87.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
69262325 Antisense, RP_050303_02_A06, Mouse strain C57BL/6J (56 days, male) 2.4

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