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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:211.4 nTPM
GTEx:211.4 nTPM
FANTOM5:425.1 Scaled Tags Per Million
Pig:747.9 nTPM
Mouse:850.0 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA036762
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA036763
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Low
Inner nuclear layer Not detected
Inner plexiform layer Low
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 211.4
Samples: 105

Max nTPM: 379.8
Min nTPM: 99.9
Std nTPM: 57.5
Median nTPM:
237_1 82 years, male 379.8
375_1 74 years, female 350.5
35_1 74 years, female 346.0
316_1 62 years, male 341.4
218_1 71 years, female 321.9
447_1 81 years, male 321.3
379_1 60 years, male 321.0
386_1 76 years, male 316.2
319_1 81 years, male 312.2
286_1 68 years, female 304.8
217_1 76 years, male 289.6
354_1 81 years, female 288.3
396_1 62 years, male 287.4
6_1 73 years, female 283.9
376_1 75 years, female 280.8
163_1 78 years, male 276.6
243_1 75 years, male 273.1
229_1 69 years, female 264.6
355_1 70 years, female 264.5
518_1 75 years, female 263.4
172_1 72 years, female 258.6
322_1 76 years, male 258.1
265_1 87 years, male 251.6
503_1 68 years, male 248.2
384_1 83 years, male 243.1
377_1 82 years, female 242.1
353_1 82 years, female 240.9
347_1 72 years, male 239.6
349_1 83 years, male 239.0
348_1 84 years, male 237.7
313_1 79 years, female 235.7
318_1 68 years, male 230.5
246_1 77 years, male 230.4
311_1 78 years, male 230.3
320_1 89 years, female 228.1
335_1 73 years, female 226.4
177_1 74 years, male 223.1
153_1 70 years, female 221.0
405_1 91 years, male 218.1
43_1 64 years, female 216.6
142_1 61 years, female 215.1
352_1 62 years, male 214.4
324_1 76 years, male 214.2
251_1 78 years, male 214.1
350_1 84 years, female 213.7
468_1 89 years, male 211.5
292_1 71 years, male 209.4
351_1 91 years, male 209.0
415_1 77 years, female 208.7
425_1 59 years, female 208.3
526_1 61 years, male 207.6
307_1 66 years, female 207.1
81_1 67 years, male 206.1
356_1 87 years, female 204.3
173_1 67 years, male 202.5
389_1 86 years, female 202.4
264_1 73 years, female 201.8
189_1 76 years, male 200.8
506_1 65 years, male 200.7
17_1 71 years, male 200.0
315_1 62 years, female 198.0
126_1 63 years, male 196.0
162_1 79 years, female 195.1
32_1 67 years, male 194.5
115_1 83 years, male 191.2
414_1 84 years, female 188.7
499_1 55 years, female 184.5
4_1 88 years, female 182.4
99_1 64 years, male 177.6
321_1 62 years, female 176.0
42_1 85 years, male 175.0
145_1 84 years, male 174.9
404_1 82 years, female 174.8
394_1 75 years, female 174.6
406_1 79 years, male 173.3
480_1 63 years, male 172.9
466_1 57 years, female 172.4
109_1 81 years, female 171.3
117_1 61 years, male 170.0
254_1 77 years, female 167.9
120_1 70 years, female 166.1
266_1 85 years, male 165.1
517_1 88 years, male 164.6
490_1 67 years, female 159.9
9_1 66 years, female 157.3
18_1 88 years, male 157.1
293_1 68 years, female 156.8
288_1 66 years, female 156.3
452_1 88 years, female 155.9
314_1 67 years, male 155.1
137_1 83 years, male 154.7
2_1 77 years, female 152.0
291_1 76 years, male 151.5
139_1 64 years, female 150.7
149_1 88 years, male 147.2
413_1 59 years, female 145.2
491_1 89 years, female 141.1
295_1 61 years, female 138.6
501_1 88 years, male 137.7
317_1 60 years, male 135.9
119_1 70 years, female 123.6
495_1 57 years, female 119.7
41_1 94 years, female 119.4
308_1 70 years, female 111.6
89_1 63 years, male 99.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

425.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 425.1
FF:10030-101E3 24-65 years, mixed 425.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

747.9
Pig sample Sample description nTPM
Retina
nTPM: 747.9
Samples: 4

Max nTPM: 927.0
Min nTPM: 616.1
Sample A Female 751.5
Sample B Female 616.1
Sample C Male 927.0
Sample D Male 697.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

850.0
Mouse sample Sample description nTPM
Retina
nTPM: 850.0
Samples: 4

Max nTPM: 930.7
Min nTPM: 809.6
Sample A Male 809.6
Sample B Male 816.4
Sample C Female 930.7
Sample D Female 843.1

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