We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CABP5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CABP5
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : High
Inner nuclear layer: Low
Inner plexiform layer: Low
Limiting membrane: Not detected
Nerve fiber layer: Low
Outer plexiform layer: Low
Photoreceptor cells: Not detected
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:376.6 nTPM
GTEx:376.6 nTPM
FANTOM5:80.6 Scaled Tags Per Million
Pig:142.3 nTPM
Mouse:142.5 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA043698
Pigment epithelial cells Not detected
Photoreceptor cells Not detected
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Low
Inner plexiform layer Not detected
Ganglion cells High
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

376.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 376.6
Samples: 105

Max nTPM: 597.5
Min nTPM: 130.4
Std nTPM: 94.4
Median nTPM:
376_1 75 years, female 597.5
316_1 62 years, male 587.7
229_1 69 years, female 562.0
153_1 70 years, female 549.1
35_1 74 years, female 534.8
6_1 73 years, female 527.1
172_1 72 years, female 525.9
499_1 55 years, female 514.3
145_1 84 years, male 497.8
126_1 63 years, male 495.5
9_1 66 years, female 492.7
405_1 91 years, male 487.5
495_1 57 years, female 482.6
335_1 73 years, female 477.4
352_1 62 years, male 476.3
319_1 81 years, male 467.8
526_1 61 years, male 465.3
384_1 83 years, male 464.9
311_1 78 years, male 464.4
17_1 71 years, male 463.4
389_1 86 years, female 461.2
415_1 77 years, female 457.6
189_1 76 years, male 456.2
81_1 67 years, male 455.9
386_1 76 years, male 454.0
503_1 68 years, male 449.0
163_1 78 years, male 443.9
286_1 68 years, female 443.3
377_1 82 years, female 431.8
246_1 77 years, male 431.6
292_1 71 years, male 426.5
142_1 61 years, female 422.9
396_1 62 years, male 421.5
217_1 76 years, male 420.4
115_1 83 years, male 419.9
517_1 88 years, male 419.6
218_1 71 years, female 410.2
254_1 77 years, female 406.4
355_1 70 years, female 406.4
293_1 68 years, female 401.3
324_1 76 years, male 401.3
321_1 62 years, female 400.2
350_1 84 years, female 395.9
43_1 64 years, female 395.3
89_1 63 years, male 394.3
18_1 88 years, male 391.2
137_1 83 years, male 390.8
315_1 62 years, female 389.1
347_1 72 years, male 388.0
291_1 76 years, male 386.6
351_1 91 years, male 386.6
353_1 82 years, female 386.3
356_1 87 years, female 384.5
313_1 79 years, female 380.7
265_1 87 years, male 380.0
349_1 83 years, male 374.6
295_1 61 years, female 372.5
149_1 88 years, male 371.2
379_1 60 years, male 368.2
413_1 59 years, female 364.6
266_1 85 years, male 364.1
490_1 67 years, female 362.9
120_1 70 years, female 361.7
264_1 73 years, female 356.0
320_1 89 years, female 355.4
314_1 67 years, male 352.2
4_1 88 years, female 349.9
425_1 59 years, female 348.0
2_1 77 years, female 346.0
307_1 66 years, female 341.8
452_1 88 years, female 338.8
109_1 81 years, female 338.0
506_1 65 years, male 338.0
318_1 68 years, male 337.4
501_1 88 years, male 330.7
404_1 82 years, female 328.3
32_1 67 years, male 325.4
251_1 78 years, male 324.1
414_1 84 years, female 319.2
99_1 64 years, male 315.1
447_1 81 years, male 314.2
322_1 76 years, male 309.6
348_1 84 years, male 305.8
42_1 85 years, male 302.9
177_1 74 years, male 299.5
162_1 79 years, female 297.1
394_1 75 years, female 293.0
173_1 67 years, male 285.2
375_1 74 years, female 278.2
288_1 66 years, female 273.9
468_1 89 years, male 269.1
518_1 75 years, female 268.7
237_1 82 years, male 261.1
117_1 61 years, male 248.9
406_1 79 years, male 236.1
466_1 57 years, female 230.0
139_1 64 years, female 229.2
317_1 60 years, male 228.9
243_1 75 years, male 224.8
119_1 70 years, female 216.6
354_1 81 years, female 208.9
41_1 94 years, female 193.0
308_1 70 years, female 171.9
491_1 89 years, female 158.7
480_1 63 years, male 130.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 80.6
FF:10030-101E3 24-65 years, mixed 80.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.3
Pig sample Sample description nTPM
Retina
nTPM: 142.3
Samples: 4

Max nTPM: 146.4
Min nTPM: 134.3
Sample A Female 134.3
Sample B Female 146.4
Sample C Male 146.3
Sample D Male 142.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.5
Mouse sample Sample description nTPM
Retina
nTPM: 142.5
Samples: 4

Max nTPM: 152.3
Min nTPM: 130.9
Sample A Male 152.3
Sample B Male 142.4
Sample C Female 130.9
Sample D Female 144.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org