We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CAPS
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CAPS
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:35.8 nTPM
HPA Brain:53.4 nTPM
GTEx:35.8 nTPM
FANTOM5:19.2 Scaled Tags Per Million
Pig:11.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.4
Sample id Sample description nTPM
Amygdala
nTPM: 53.4
1987 Female, age 91, left hemisphere 108.0
2517 Female, age 94, left hemisphere 72.7
2514 Male, age 75, right hemisphere 31.9
2695 Female, age 67, right hemisphere 29.9
2814 Male, age 76, right hemisphere 24.5
Basal amygdala
nTPM: 21.8
2110 Male, age 80, left hemisphere 35.1
2609 Male, age 75, right hemisphere 24.0
1955 Male, age 76, both hemispheres 19.7
2685 Female, age 94, left hemisphere 19.7
2827 Female, age 67, right hemisphere 17.9
2243 Female, age 91, right hemisphere 14.2
Central amygdala
nTPM: 27.2
2515 Male, age 75, right hemisphere 51.7
1905 Male, age 76, both hemispheres 28.1
2701 Female, age 91, right hemisphere 20.6
2826 Female, age 94, left hemisphere 20.4
2239 Male, age 80, left hemisphere 15.1
Corticomedial amygdala
nTPM: 19.3
2242 Female, age 91, right hemisphere 33.4
2535 Female, age 67, right hemisphere 19.2
2428 Male, age 75, right hemisphere 18.7
2240 Male, age 76, both hemispheres 18.3
2829 Male, age 80, left hemisphere 13.4
2429 Female, age 94, left hemisphere 12.9
Lateral amygdala
nTPM: 23.8
2256 Male, age 80, left hemisphere 47.6
2516 Male, age 75, right hemisphere 22.8
2255 Female, age 91, right hemisphere 21.0
2830 Female, age 67, right hemisphere 18.8
1883 Male, age 76, both hemispheres 18.7
2534 Female, age 94, left hemisphere 14.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 35.8
Samples: 152

Max nTPM: 470.2
Min nTPM: 3.2
Std nTPM: 60.1
Median nTPM: 15.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 470.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 311.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 270.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 219.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 179.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 179.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 178.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 167.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 162.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 134.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 103.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 103.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 100.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 99.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 96.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 75.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 75.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 70.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 69.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 66.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 63.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 60.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 54.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 47.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 45.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 41.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 41.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 40.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 38.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 37.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 35.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 32.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 32.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 32.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 31.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 30.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 30.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 26.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 25.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 25.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 24.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 23.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 23.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 23.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 22.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 22.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 22.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 22.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 21.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 20.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 20.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 20.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 20.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 20.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 20.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 19.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 18.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 18.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 18.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 18.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 17.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 17.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 17.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 16.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 16.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 16.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 16.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 16.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 16.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 15.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 15.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 15.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 15.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 15.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 15.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 14.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 14.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 14.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 13.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 13.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 13.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 13.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 13.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 13.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 13.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 13.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 13.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 13.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 13.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 13.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 12.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 12.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 12.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 12.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 12.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 12.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 12.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 12.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 12.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 11.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 11.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 11.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 11.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 11.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 11.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 11.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 11.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 11.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 11.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 11.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 11.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 10.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 10.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 10.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 10.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 10.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 10.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 10.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 10.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 9.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 9.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 9.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 9.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 9.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 8.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 8.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 8.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 8.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 8.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 8.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 8.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 8.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 8.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 8.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 7.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 7.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 7.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 7.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 6.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 6.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 6.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 6.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 6.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 6.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.2
FF:10151-102I7 76 years, female 19.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.4
Pig sample Sample description nTPM
Amygdala
nTPM: 11.4
Samples: 4

Max nTPM: 16.2
Min nTPM: 8.2
Sample A Female 16.2
Sample B Female 9.6
Sample C Male 11.5
Sample D Male 8.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org