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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:129.8 nTPM
FANTOM5:69.7 Scaled Tags Per Million
Pig:64.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA065685
Glial cells Medium
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 129.8
Samples: 246

Max nTPM: 240.8
Min nTPM: 71.2
Std nTPM: 27.7
Median nTPM: 125.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 240.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 228.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 220.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 219.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 215.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 208.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 199.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 196.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 195.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 195.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 185.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 185.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 184.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 181.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 178.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 178.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 175.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 174.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 173.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 171.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 164.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 164.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 163.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 162.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 161.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 161.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 160.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 158.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 158.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 158.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 158.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 156.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 156.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 156.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 155.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 155.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 154.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 154.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 153.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 153.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 153.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 153.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 152.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 150.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 150.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 150.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 149.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 149.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 146.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 146.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 146.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 146.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 145.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 145.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 144.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 144.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 144.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 144.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 144.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 143.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 143.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 143.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 143.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 143.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 142.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 142.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 141.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 141.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 141.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 141.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 140.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 140.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 139.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 139.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 139.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 139.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 138.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 138.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 137.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 137.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 137.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 136.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 136.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 136.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 136.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 135.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 135.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 134.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 134.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 133.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 133.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 133.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 133.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 133.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 133.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 132.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 132.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 132.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 131.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 131.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 131.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 131.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 131.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 130.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 130.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 130.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 130.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 129.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 129.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 129.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 129.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 128.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 128.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 128.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 127.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 127.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 127.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 126.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 126.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 126.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 125.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 125.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 125.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 124.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 124.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 124.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 124.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 124.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 123.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 123.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 123.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 123.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 122.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 122.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 122.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 122.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 122.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 122.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 122.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 122.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 121.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 121.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 121.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 120.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 120.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 119.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 119.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 119.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 119.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 119.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 119.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 118.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 118.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 118.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 118.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 117.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 116.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 116.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 116.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 116.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 116.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 115.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 115.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 115.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 114.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 114.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 114.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 114.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 114.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 114.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 113.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 113.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 113.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 113.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 113.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 113.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 112.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 112.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 112.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 111.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 111.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 111.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 111.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 111.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 111.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 111.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 110.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 110.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 110.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 110.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 110.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 109.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 109.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 109.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 108.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 108.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 108.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 108.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 107.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 107.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 107.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 107.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 107.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 107.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 106.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 106.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 105.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 105.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 105.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 105.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 103.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 103.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 102.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 102.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 102.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 102.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 102.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 102.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 102.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 101.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 101.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 101.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 101.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 101.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 100.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 100.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 99.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 99.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 97.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 97.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 94.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 91.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 91.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 89.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 88.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 85.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 84.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 84.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 81.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 79.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 77.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 76.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 74.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 71.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.7
FF:10164-103B2 76 years, female 69.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.4
Pig sample Sample description nTPM
Caudate
nTPM: 64.4
Samples: 4

Max nTPM: 72.1
Min nTPM: 56.5
Sample A Female 59.9
Sample B Female 69.0
Sample C Male 72.1
Sample D Male 56.5

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