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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:158.6 nTPM
HPA Brain:101.6 nTPM
GTEx:158.6 nTPM
FANTOM5:96.7 Scaled Tags Per Million
Pig:93.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 85.0
1981 Female, age 72, midline 120.3
2565 Male, age 75, midline 92.7
2048 Male, age 55, midline 74.2
2816 Male, age 47, midline 70.3
2194 Female, age 79, both hemispheres 67.6
Cervical spinal cord, dorsal horn
nTPM: 100.9
2173 Female, age 72, unknown 141.7
2069 Male, age 47, both hemispheres 123.6
2296 Male, age 66, both hemispheres 121.0
1877 Male, age 55, unknown 86.0
2297 Male, age 75, both hemispheres 76.7
2721 Male, age 90, both hemispheres 56.3
Cervical spinal cord, ventral horn
nTPM: 101.6
2098 Female, age 72, unknown 135.7
2809 Male, age 90, both hemispheres 120.7
2480 Male, age 75, both hemispheres 116.3
2068 Male, age 55, unknown 89.0
2295 Male, age 66, both hemispheres 87.0
2820 Female, age 79, both hemispheres 61.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 158.6
Samples: 159

Max nTPM: 271.5
Min nTPM: 88.5
Std nTPM: 30.9
Median nTPM: 157.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 271.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 256.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 248.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 238.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 215.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 211.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 207.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 207.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 203.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 201.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 200.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 199.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 198.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 198.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 198.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 197.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 195.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 195.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 194.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 194.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 193.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 192.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 192.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 192.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 190.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 190.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 189.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 188.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 186.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 185.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 184.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 183.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 183.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 183.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 183.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 182.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 180.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 180.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 178.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 178.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 177.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 176.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 176.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 176.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 172.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 171.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 170.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 169.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 168.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 168.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 168.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 168.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 168.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 168.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 167.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 167.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 166.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 166.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 166.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 165.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 165.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 164.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 164.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 163.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 162.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 162.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 161.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 161.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 160.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 160.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 160.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 159.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 159.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 159.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 159.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 158.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 158.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 158.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 158.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 157.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 156.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 156.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 155.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 155.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 155.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 155.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 155.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 154.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 154.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 154.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 154.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 153.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 152.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 152.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 151.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 150.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 149.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 149.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 149.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 148.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 147.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 147.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 146.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 146.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 146.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 145.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 144.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 144.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 144.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 142.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 141.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 141.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 140.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 139.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 139.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 139.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 138.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 138.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 137.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 137.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 137.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 136.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 136.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 136.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 136.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 135.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 134.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 134.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 133.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 133.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 133.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 132.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 132.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 131.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 130.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 130.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 129.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 128.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 128.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 124.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 122.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 122.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 121.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 120.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 116.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 114.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 111.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 108.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 108.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 106.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 106.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 106.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 105.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 104.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 101.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 101.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 97.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 88.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 96.7
FF:10181-103D1 60 years, female 118.0
FF:10159-103A6 76 years, female 75.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 82.8
Samples: 4

Max nTPM: 93.8
Min nTPM: 77.9
Sample A Female 81.5
Sample B Female 77.9
Sample C Male 93.8
Sample D Male 78.0
Ventral spinal cord
nTPM: 93.6
Samples: 4

Max nTPM: 102.6
Min nTPM: 84.9
Sample A Female 86.7
Sample B Female 102.6
Sample C Male 100.1
Sample D Male 84.9

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