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RPL18A
HPA
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  • SUMMARY

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  • STRUCT & INT

  • RPL18A
CANCER STOMACH CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
STAD TCGA PROTEIN EXPRESSION
ANTIBODIES
AND
VALIDATION
Dictionary
Stomach cancer
Human cancer
Stomach adenocarcinoma
STOMACH ADENOCARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

RPL18A is not prognostic in Stomach Adenocarcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 2483.39
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 3087.9
Number of samples 346
Samples
Sample Description pTPM
TCGA-D7-5578-01A 80 years, male, white, stage:Stage IIIA, alive, 385 days 13978.2
TCGA-BR-8372-01A 63 years, male, white, stage:Stage IIIC, alive, 951 days 8595.9
TCGA-D7-A74A-01A 61 years, female, white, stage:Stage IIIA, alive, 607 days 8100.0
TCGA-IN-7806-01A 50 years, male, white, stage:Stage IIB, alive, 1106 days 7699.8
TCGA-BR-6707-01A 75 years, male, white, stage:Stage IIA, dead, 605 days 7699.7
TCGA-CG-5726-01A 73 years, male, stage:Stage IA, dead, 881 days 7410.6
TCGA-CG-5722-01A 67 years, female, stage:Stage IV, alive, 30 days 7132.8
TCGA-BR-6705-01A 68 years, female, white, stage:Stage IIIB, dead, 779 days 6903.3
TCGA-CG-5724-01A 59 years, male, stage:Stage IV, dead, 366 days 6683.6
TCGA-CG-5721-01A 58 years, male, stage:Stage IV, alive, 183 days 6528.1
TCGA-CG-5723-01A 83 years, male, stage:Stage II, alive, 2496 days 6495.8
TCGA-HJ-7597-01A 71 years, female, white, stage:Stage IB, dead, 805 days 6337.0
TCGA-D7-5577-01A 53 years, female, white, stage:Stage IIIA, dead, 782 days 6292.9
TCGA-SW-A7EB-01A 45 years, male, white, stage:Stage IIIA, alive, 176 days 6204.5
TCGA-BR-7707-01A 69 years, female, white, stage:Stage IB, alive, 1090 days 6162.3
TCGA-BR-7717-01A 63 years, male, white, stage:Stage IV, dead, 552 days 6053.8
TCGA-CD-5801-01A 69 years, male, asian, stage:Stage IIIA, dead, 401 days 6052.1
TCGA-BR-6455-01A 59 years, male, white, stage:Stage IIB, dead, 422 days 5941.7
TCGA-HF-A5NB-01A 75 years, female, stage:Stage IIIC, alive, 928 days 5925.9
TCGA-VQ-A8E3-01A 79 years, male, white, stage:Stage IIA, dead, 661 days 5855.2
TCGA-CG-4437-01A 83 years, male, stage:Stage II, alive, 245 days 5850.1
TCGA-BR-8361-01A 71 years, female, white, stage:Stage IIIC, alive, 946 days 5823.8
TCGA-BR-6566-01A 64 years, female, white, stage:Stage IIA, alive, 997 days 5794.9
TCGA-D7-6528-01A 70 years, female, white, stage:Stage IB, alive, 463 days 5571.8
TCGA-D7-6519-01A 64 years, female, white, stage:'--, alive, 625 days 5534.6
TCGA-VQ-A94T-01A 73 years, male, stage:Stage IIIB, dead, 342 days 5430.4
TCGA-BR-6453-01A 54 years, male, white, stage:Stage IIA, alive, 485 days 5402.7
TCGA-B7-5818-01A 62 years, male, white, stage:Stage IB, alive, 356 days 5302.4
TCGA-R5-A7ZF-01A 65 years, female, black or african american, stage:Stage IV, dead, 259 days 5181.5
TCGA-CD-5803-01A 78 years, female, asian, stage:Stage II, dead, 341 days 5170.1
TCGA-SW-A7EA-01A 61 years, female, white, stage:Stage IB, alive, 579 days 5167.4
TCGA-BR-7715-01A 65 years, male, white, stage:Stage IIA, alive, 1023 days 5065.1
TCGA-HU-A4H5-01A 71 years, male, asian, stage:Stage IB, alive, 724 days 5056.7
TCGA-CD-8528-01A 43 years, female, asian, stage:Stage IIIA, alive, 375 days 4985.2
TCGA-HF-7134-01A male, stage:Stage IA, alive, 1588 days 4871.5
TCGA-BR-8059-01A 72 years, male, white, stage:Stage III, dead, 439 days 4843.9
TCGA-BR-8589-01A 56 years, male, white, stage:Stage IIIB, alive, 825 days 4839.4
TCGA-VQ-A925-01A 66 years, male, white, stage:Stage IIIA, dead, 138 days 4784.0
TCGA-D7-6522-01A 58 years, male, white, stage:Stage IB, alive, 566 days 4764.5
TCGA-CD-8531-01A 66 years, female, asian, stage:Stage IIIA, alive, 383 days 4668.2
TCGA-HU-A4G2-01A 45 years, male, asian, stage:Stage IIB, alive, 739 days 4591.3
TCGA-BR-8676-01A 59 years, male, white, stage:Stage IIIB, alive, 229 days 4514.0
TCGA-BR-6565-01A 67 years, male, white, stage:Stage IIB, dead, 279 days 4468.4
TCGA-CD-8534-01A 41 years, male, asian, stage:Stage II, alive, 367 days 4424.1
TCGA-D7-8575-01A 75 years, male, white, stage:Stage IIIA, dead, 554 days 4414.3
TCGA-D7-6521-01A 65 years, male, white, stage:'--, alive, 564 days 4370.9
TCGA-D7-A6EX-01A 72 years, female, white, stage:Stage IIIA, alive, 344 days 4304.7
TCGA-CD-5799-01A 45 years, male, asian, stage:Stage II, alive, 396 days 4294.6
TCGA-HU-8249-01A 76 years, male, asian, stage:Stage IIIA, alive, 881 days 4282.1
TCGA-HF-7133-01A female, stage:Stage IV, alive, 1918 days 4251.0
TCGA-BR-6564-01A 46 years, female, white, stage:Stage IIIA, dead, 794 days 4204.3
TCGA-CD-5798-01A 82 years, male, asian, stage:Stage II, alive, 408 days 4203.5
TCGA-IN-A6RR-01A 84 years, male, white, stage:'--, dead, 205 days 4195.5
TCGA-HU-8604-01A 82 years, female, asian, stage:Stage IIA, alive, 694 days 4172.5
TCGA-CD-5813-01A 60 years, male, asian, stage:Stage II, dead, 377 days 4162.6
TCGA-VQ-A8PQ-01A 50 years, female, white, stage:Stage IV, dead, 476 days 4119.3
TCGA-VQ-A94R-01A 63 years, male, white, stage:'--, dead, 1294 days 4117.2
TCGA-BR-A4QL-01A 75 years, female, white, stage:Stage IIIB, dead, 491 days 4115.5
TCGA-RD-A7C1-01A 82 years, male, white, stage:Stage IB, dead, 507 days 4112.1
TCGA-BR-8289-01A 57 years, male, white, stage:Stage IV, dead, 81 days 4099.4
TCGA-R5-A7ZI-01A 44 years, female, white, stage:Stage IV, alive, 2267 days 4026.5
TCGA-CG-5720-01A 71 years, male, stage:Stage IB, dead, 30 days 4009.0
TCGA-BR-A44T-01A 53 years, female, white, stage:Stage IIA, alive, 1038 days 4007.1
TCGA-CG-5719-01A 54 years, female, stage:Stage IV, alive, 31 days 4001.8
TCGA-BR-A4J6-01A 69 years, female, white, stage:Stage IIA, alive, 20 days 3961.1
TCGA-RD-A7BS-01A 46 years, male, white, stage:Stage IIIA, dead, 336 days 3954.7
TCGA-VQ-A8PE-01A 78 years, male, white, stage:Stage IIIB, dead, 675 days 3952.0
TCGA-HU-A4GT-01A 71 years, female, asian, stage:Stage IIA, alive, 198 days 3950.7
TCGA-BR-6709-01A 57 years, female, white, stage:Stage IIIB, dead, 370 days 3904.7
TCGA-IN-7808-01A 59 years, male, white, stage:'--, dead, 105 days 3892.3
TCGA-HU-A4GQ-01A 71 years, male, asian, stage:Stage IIIC, dead, 3 days 3869.9
TCGA-D7-A4YX-01A 63 years, male, white, stage:Stage IIB, alive, 1108 days 3822.2
TCGA-D7-6524-01A 53 years, male, white, stage:Stage II, alive, 543 days 3811.1
TCGA-IN-A6RJ-01A 64 years, male, white, stage:Stage IA, alive, 379 days 3808.0
TCGA-HU-8602-01A 58 years, female, asian, stage:Stage IIB, alive, 679 days 3807.6
TCGA-CD-5800-01A 51 years, female, asian, stage:Stage II, alive, 400 days 3795.1
TCGA-BR-8487-01A 64 years, female, white, stage:Stage IIA, alive, 34 days 3747.3
TCGA-F1-A72C-01A 68 years, male, asian, stage:Stage IIA, alive, 346 days 3737.1
TCGA-D7-6815-01A 70 years, female, white, stage:Stage IIB, alive, 486 days 3730.1
TCGA-RD-A8N6-01A 78 years, female, white, stage:Stage IIIA, dead, 272 days 3725.7
TCGA-BR-8077-01A 58 years, female, white, stage:Stage IIIB, alive, 21 days 3696.4
TCGA-BR-7959-01A 59 years, male, white, stage:Stage IIIA, alive, 1010 days 3684.4
TCGA-BR-6563-01A 60 years, male, white, stage:Stage IIB, alive, 1190 days 3676.0
TCGA-BR-4280-01A 78 years, female, white, stage:Stage III, dead, 201 days 3645.2
TCGA-IN-A7NR-01A 64 years, female, white, stage:Stage IV, alive, 198 days 3642.6
TCGA-F1-6874-01A 79 years, male, white, stage:Stage IB, alive, 440 days 3632.5
TCGA-BR-8081-01A 71 years, female, white, stage:Stage IIB, alive, 981 days 3623.3
TCGA-VQ-A928-01A 49 years, male, white, stage:Stage IV, dead, 174 days 3613.9
TCGA-CG-4441-01A 83 years, male, stage:Stage IIIA, dead, 426 days 3600.6
TCGA-BR-8284-01A 72 years, female, white, stage:Stage IIIC, dead, 245 days 3599.9
TCGA-IN-A6RL-01A 84 years, male, white, stage:'--, dead, 406 days 3595.2
TCGA-D7-6526-01A 67 years, female, white, stage:Stage IIIA, alive, 523 days 3591.1
TCGA-BR-6457-01A 69 years, male, white, stage:Stage IIA, alive, 416 days 3576.6
TCGA-R5-A7O7-01A 51 years, male, white, stage:Stage IV, alive, 1389 days 3565.9
TCGA-D7-6527-01A 62 years, male, white, stage:Stage II, dead, 312 days 3541.7
TCGA-B7-A5TK-01A 51 years, male, white, stage:Stage IIIA, alive, 288 days 3503.9
TCGA-IN-A7NU-01A 69 years, male, white, stage:Stage IIIB, alive, 356 days 3492.4
TCGA-BR-8058-01A 53 years, female, white, stage:Stage IIIB, alive, 1133 days 3488.9
TCGA-D7-A6EY-01A 72 years, female, white, stage:Stage IIIB, dead, 348 days 3473.8
TCGA-BR-4253-01A 80 years, female, white, stage:Stage IIIA, dead, 124 days 3466.0
TCGA-BR-8295-01A 60 years, female, white, stage:Stage IIB, dead, 67 days 3459.7
TCGA-MX-A5UJ-01A 86 years, female, white, stage:Stage IIIA, alive, 600 days 3441.3
TCGA-D7-6525-01A 58 years, male, white, stage:Stage IIIA, dead, 406 days 3431.7
TCGA-BR-8368-01A 84 years, female, white, stage:Stage IB, alive, 131 days 3425.4
TCGA-FP-8210-01A 48 years, male, asian, stage:Stage IIIA, dead, 153 days 3423.7
TCGA-BR-7958-01A 60 years, male, white, stage:Stage IIIB, alive, 899 days 3421.4
TCGA-HU-A4G9-01A 67 years, female, asian, stage:Stage IA, alive, 736 days 3415.1
TCGA-RD-A7BT-01A 66 years, male, native hawaiian or other pacific islander, stage:Stage IV, dead, 262 days 3399.8
TCGA-BR-6456-01A 74 years, female, white, stage:Stage IIB, dead, 526 days 3399.8
TCGA-VQ-A8PP-01A 76 years, male, stage:Stage IV, dead, 712 days 3399.5
TCGA-VQ-A8PU-01A 72 years, female, white, stage:Stage IIIA, dead, 832 days 3364.0
TCGA-BR-7957-01A 50 years, female, white, stage:Stage IV, dead, 276 days 3359.7
TCGA-BR-8382-01A 67 years, female, white, stage:Stage IIIC, dead, 762 days 3357.8
TCGA-VQ-A8P2-01A 68 years, male, white, stage:Stage IIIA, alive, 1160 days 3336.7
TCGA-D7-8572-01A 57 years, male, white, stage:Stage IIB, alive, 511 days 3317.1
TCGA-BR-6803-01A 54 years, female, white, stage:Stage IIA, alive, 949 days 3308.3
TCGA-CG-5734-01A 68 years, male, stage:Stage IIIA, dead, 243 days 3304.7
TCGA-BR-8677-01A 74 years, female, white, stage:Stage IIIB, alive, 813 days 3301.3
TCGA-BR-8381-01A 51 years, male, white, stage:Stage IIB, alive, 224 days 3300.0
TCGA-HU-A4GX-01A 70 years, female, asian, stage:Stage IIIC, alive, 616 days 3285.6
TCGA-HU-A4GJ-01A 60 years, female, asian, stage:Stage IIIC, alive, 650 days 3284.7
TCGA-CG-5718-01A 78 years, female, stage:Stage II, dead, 1095 days 3261.2
TCGA-BR-8591-01A 79 years, male, white, stage:Stage IIIC, alive, 856 days 3210.0
TCGA-BR-7722-01A 62 years, male, white, stage:Stage IIB, dead, 466 days 3208.6
TCGA-BR-8680-01A 45 years, male, asian, stage:Stage IV, alive, 972 days 3197.7
TCGA-BR-8366-01A 80 years, female, white, stage:Stage IIA, alive, 29 days 3197.1
TCGA-BR-6852-01A 64 years, female, white, stage:Stage IIA, alive, 1367 days 3191.3
TCGA-D7-8573-01A 57 years, male, white, stage:Stage IIA, alive, 593 days 3190.8
TCGA-BR-7723-01A 59 years, male, white, stage:Stage IIIB, dead, 874 days 3182.3
TCGA-VQ-A91Z-01A 67 years, female, white, stage:Stage IIIA, alive, 1690 days 3182.0
TCGA-RD-A8NB-01A 80 years, female, white, stage:Stage IIIA, dead, 513 days 3176.3
TCGA-BR-6802-01A 65 years, male, white, stage:Stage IIIA, alive, 940 days 3171.6
TCGA-VQ-A91S-01A 63 years, male, black or african american, stage:Stage IIIB, alive, 1000 days 3161.1
TCGA-CD-8527-01A 72 years, female, asian, stage:Stage II, dead, 218 days 3155.0
TCGA-CD-A48C-01A 79 years, female, asian, stage:Stage IIB, dead, 353 days 3144.0
TCGA-CD-8530-01A 51 years, male, asian, stage:Stage II, alive, 377 days 3135.0
TCGA-VQ-A8PJ-01A 53 years, male, stage:Stage IV, dead, 82 days 3119.3
TCGA-VQ-A8P3-01A 72 years, male, white, stage:Stage IIIA, alive, 1132 days 3112.0
TCGA-F1-6875-01A 79 years, male, black or african american, stage:Stage IA, dead, 2197 days 3106.3
TCGA-CD-8532-01A 52 years, male, asian, stage:Stage II, dead, 354 days 3104.1
TCGA-HF-7132-01A male, stage:Stage II, alive, 2351 days 3094.8
TCGA-BR-7704-01A 69 years, female, white, stage:Stage II, alive, 1072 days 3091.9
TCGA-BR-6458-01A 57 years, female, white, stage:Stage IIB, dead, 588 days 3087.1
TCGA-BR-4256-01A 80 years, male, white, stage:'--, dead, 284 days 3086.4
TCGA-IN-8462-01A 80 years, male, white, stage:Stage IIB, alive, 572 days 3081.2
TCGA-HU-A4G3-01A 54 years, male, asian, stage:Stage IIB, alive, 170 days 3068.5
TCGA-CG-5732-01A 66 years, male, stage:Stage IV, dead, 2100 days 3062.1
TCGA-VQ-AA6F-01A 57 years, male, white, stage:Stage IIB, alive, 1646 days 3059.4
TCGA-HU-8244-01A 77 years, female, asian, stage:Stage IA, alive, 742 days 3057.7
TCGA-FP-8211-01A 62 years, male, white, stage:Stage IIB, alive, 413 days 3057.4
TCGA-D7-8576-01A 54 years, female, white, stage:Stage IIIB, dead, 446 days 3047.3
TCGA-D7-6818-01A 53 years, male, white, stage:Stage IIIA, dead, 376 days 3045.1
TCGA-FP-8099-01A 79 years, male, white, stage:Stage IIA, alive, 519 days 3023.4
TCGA-VQ-A8DU-01A 63 years, male, white, stage:Stage IIIA, dead, 166 days 2994.5
TCGA-KB-A6F7-01A 54 years, female, stage:Stage IB, alive, 1935 days 2991.1
TCGA-RD-A7BW-01A 68 years, female, white, stage:Stage IB, dead, 156 days 2984.6
TCGA-B7-A5TN-01A 60 years, male, white, stage:Stage IIB, alive, 287 days 2982.7
TCGA-CG-5717-01A 58 years, male, stage:Stage II, dead, 212 days 2977.1
TCGA-BR-8371-01A 62 years, male, white, stage:Stage IIIB, dead, 359 days 2976.1
TCGA-BR-A44U-01A 70 years, male, white, stage:Stage IIIB, dead, 422 days 2901.6
TCGA-IN-A6RN-01A 72 years, female, white, stage:Stage IIA, alive, 594 days 2897.8
TCGA-BR-8286-01A 49 years, male, white, stage:Stage II, alive, 895 days 2887.5
TCGA-FP-7829-01A 69 years, male, white, stage:Stage IIB, alive, 594 days 2873.4
TCGA-BR-7196-01A 64 years, male, white, stage:Stage IV, alive, 666 days 2859.9
TCGA-HU-8238-01A 56 years, male, asian, stage:'--, alive, 46 days 2839.9
TCGA-D7-8574-01A 72 years, male, white, stage:Stage IIIA, alive, 523 days 2839.7
TCGA-BR-8686-01A 69 years, male, asian, stage:Stage IIIB, dead, 635 days 2805.0
TCGA-BR-6801-01A 70 years, male, white, stage:Stage IIA, alive, 1223 days 2802.6
TCGA-IN-A6RS-01A 76 years, male, white, stage:Stage IA, alive, 383 days 2797.2
TCGA-VQ-A8PO-01A 74 years, male, white, stage:Stage IIB, dead, 282 days 2794.5
TCGA-D7-A748-01A 41 years, female, white, stage:Stage IV, dead, 132 days 2791.0
TCGA-BR-6452-01A 78 years, female, white, stage:Stage IIA, alive, 1055 days 2781.7
TCGA-VQ-A91N-01A 59 years, female, stage:Stage IV, dead, 570 days 2760.0
TCGA-VQ-A8DV-01A 48 years, male, white, stage:Stage IB, dead, 403 days 2750.5
TCGA-VQ-A924-01A 69 years, male, stage:Stage II, dead, 1686 days 2749.8
TCGA-KB-A93H-01A 79 years, female, asian, stage:Stage IIB, alive, 1145 days 2742.6
TCGA-BR-8380-01A 55 years, male, white, stage:Stage IIIC, dead, 21 days 2738.2
TCGA-CG-4306-01A 90 years, male, stage:Stage IV, dead, 1 days 2735.7
TCGA-BR-8367-01A 55 years, male, white, stage:Stage IIIB, dead, 801 days 2728.6
TCGA-CD-8533-01A 48 years, male, asian, stage:Stage II, alive, 468 days 2728.4
TCGA-BR-8687-01A 67 years, female, white, stage:Stage IIIC, dead, 250 days 2711.2
TCGA-D7-A6EZ-01A 66 years, male, white, stage:Stage IIIA, dead, 618 days 2705.4
TCGA-VQ-A8PB-01A 65 years, female, white, stage:Stage II, dead, 1043 days 2701.9
TCGA-CD-A4MG-01A 76 years, male, asian, stage:Stage IIA, dead, 200 days 2700.5
TCGA-CD-8525-01A 82 years, female, asian, stage:Stage IIIA, alive, 383 days 2694.3
TCGA-BR-4279-01A 43 years, male, white, stage:Stage II, dead, 291 days 2692.2
TCGA-B7-A5TJ-01A 74 years, male, white, stage:Stage IIB, alive, 335 days 2691.2
TCGA-HU-A4GF-01A 69 years, male, asian, stage:Stage IIA, alive, 785 days 2689.8
TCGA-HU-A4H4-01A 53 years, female, asian, stage:Stage IIB, alive, 725 days 2687.1
TCGA-D7-8570-01A 44 years, male, white, stage:Stage IIIB, alive, 752 days 2684.7
TCGA-BR-A4J8-01A 71 years, female, white, stage:Stage IIIB, alive, 411 days 2676.2
TCGA-D7-A6F0-01A 79 years, female, white, stage:Stage IB, alive, 678 days 2665.1
TCGA-CG-4444-01A 76 years, male, stage:Stage IIIA, alive, 1431 days 2660.7
TCGA-IN-AB1X-01A 78 years, female, white, stage:Stage IIA, alive, 411 days 2652.8
TCGA-RD-A8N5-01A 78 years, male, white, stage:Stage IIIA, dead, 1747 days 2633.8
TCGA-FP-A4BF-01A 68 years, male, white, stage:Stage IIIA, dead, 168 days 2632.4
TCGA-VQ-A91Q-01A 61 years, male, stage:Stage IV, dead, 633 days 2627.2
TCGA-IN-AB1V-01A 63 years, male, white, stage:Stage IA, alive, 479 days 2624.3
TCGA-BR-8365-01A 70 years, female, white, stage:Stage IIA, dead, 533 days 2622.4
TCGA-BR-8291-01A 61 years, male, white, stage:Stage IIB, dead, 607 days 2609.5
TCGA-HU-A4G8-01A 71 years, female, asian, stage:Stage IIB, alive, 690 days 2603.3
TCGA-BR-8080-01A 72 years, female, white, stage:Stage IIIC, dead, 292 days 2595.6
TCGA-D7-A6EV-01A 71 years, female, white, stage:Stage IIB, alive, 342 days 2590.4
TCGA-BR-4201-01A 66 years, female, white, stage:'--, dead, 940 days 2584.3
TCGA-FP-8209-01A 49 years, male, white, stage:Stage IB, dead, 1811 days 2581.8
TCGA-BR-8364-01A 42 years, female, white, stage:Stage IIIC, alive, 675 days 2580.6
TCGA-BR-4267-01A 51 years, male, white, stage:Stage IB, dead, 188 days 2575.2
TCGA-IN-A6RI-01A 45 years, male, white, stage:Stage I, alive, 559 days 2546.9
TCGA-D7-A4YU-01A 73 years, male, white, stage:Stage IIIB, alive, 500 days 2536.2
TCGA-HU-8608-01A 70 years, male, asian, stage:Stage IIIB, alive, 641 days 2536.2
TCGA-HU-A4GC-01A 74 years, male, asian, stage:Stage IIIB, alive, 99 days 2534.4
TCGA-BR-8588-01A 55 years, female, white, stage:Stage IIB, alive, 389 days 2533.6
TCGA-CG-4469-01A 70 years, male, stage:Stage IV, dead, 215 days 2531.5
TCGA-VQ-A8PF-01A 76 years, male, stage:Stage IIIB, dead, 76 days 2529.8
TCGA-BR-7716-01A 62 years, female, white, stage:Stage IIB, alive, 1210 days 2523.5
TCGA-VQ-A94U-01A 70 years, male, white, stage:Stage IIB, alive, 819 days 2521.9
TCGA-BR-A4J7-01A 49 years, male, asian, stage:Stage IIB, alive, 989 days 2521.4
TCGA-BR-4257-01A 79 years, female, white, stage:'--, dead, 294 days 2509.2
TCGA-BR-7901-01A 74 years, male, white, stage:Stage IIB, dead, 105 days 2491.0
TCGA-MX-A663-01A 66 years, male, white, stage:Stage IIA, dead, 300 days 2487.7
TCGA-VQ-A8PH-01A 62 years, male, white, stage:Stage IIIB, dead, 389 days 2485.3
TCGA-RD-A8N1-01A 70 years, male, white, stage:Stage IIIB, alive, 3519 days 2481.5
TCGA-F1-A448-01A 70 years, male, white, stage:Stage IIIB, alive, 647 days 2453.6
TCGA-IN-A7NT-01A 73 years, female, white, stage:Stage IIB, alive, 323 days 2446.0
TCGA-BR-A4J9-01A 55 years, male, white, stage:Stage IIA, alive, 14 days 2422.9
TCGA-CD-8535-01A 59 years, male, asian, stage:Stage IIIA, alive, 390 days 2406.8
TCGA-BR-A4PF-01A 72 years, male, white, stage:Stage IIIB, alive, 35 days 2390.9
TCGA-BR-4191-01A 72 years, male, white, stage:'--, dead, 558 days 2387.1
TCGA-HU-A4H3-01A 56 years, female, asian, stage:Stage IIIC, alive, 882 days 2384.3
TCGA-BR-8484-01A 61 years, male, white, stage:Stage IIIA, dead, 766 days 2360.8
TCGA-BR-7851-01A 74 years, male, white, stage:Stage IIB, dead, 574 days 2355.3
TCGA-VQ-A8E2-01A 57 years, male, asian, stage:Stage IIIB, alive, 1319 days 2354.4
TCGA-BR-7197-01A 69 years, male, white, stage:Stage II, alive, 280 days 2330.0
TCGA-BR-8297-01A 58 years, male, white, stage:Stage IIIC, alive, 225 days 2325.9
TCGA-VQ-A8PX-01A 51 years, male, stage:Stage IA, alive, 1964 days 2307.0
TCGA-3M-AB46-01A 70 years, male, white, stage:Stage IB, alive, 1765 days 2297.4
TCGA-VQ-AA69-01A 35 years, male, white, stage:Stage IIIA, alive, 864 days 2293.2
TCGA-CG-4465-01A 69 years, female, stage:Stage IV, dead, 274 days 2284.6
TCGA-BR-8592-01A 63 years, female, white, stage:Stage IIIB, dead, 191 days 2270.6
TCGA-VQ-A91K-01A 69 years, male, white, stage:Stage IIIA, alive, 1862 days 2265.3
TCGA-HU-A4GP-01A 62 years, female, asian, stage:Stage IIA, alive, 273 days 2264.2
TCGA-EQ-8122-01A 71 years, female, white, stage:Stage IIB, dead, 243 days 2260.3
TCGA-CG-4438-01A 56 years, male, stage:Stage IV, alive, 1645 days 2252.2
TCGA-HU-A4H0-01A 72 years, male, asian, stage:Stage IIIC, alive, 64 days 2249.9
TCGA-BR-8296-01A 58 years, female, white, stage:Stage IIIC, dead, 474 days 2241.4
TCGA-IP-7968-01A 74 years, male, white, stage:Stage IIIB, alive, 77 days 2232.4
TCGA-BR-8690-01A 54 years, female, white, stage:Stage IIIB, alive, 325 days 2214.5
TCGA-VQ-A8DT-01A 43 years, male, stage:Stage IIIB, alive, 1484 days 2202.3
TCGA-VQ-A8PC-01A 65 years, male, white, stage:Stage IIIA, dead, 1407 days 2184.0
TCGA-VQ-A8P8-01A 72 years, female, black or african american, stage:Stage IIB, alive, 942 days 2176.3
TCGA-BR-8678-01A 76 years, male, white, stage:Stage IB, alive, 754 days 2174.8
TCGA-VQ-A91X-01A 74 years, male, white, stage:Stage IIIB, dead, 289 days 2174.4
TCGA-CD-A487-01A 51 years, male, asian, stage:Stage IIB, alive, 374 days 2170.4
TCGA-BR-4187-01A 56 years, male, white, stage:'--, dead, 141 days 2163.3
TCGA-VQ-A91A-01A 67 years, male, white, stage:Stage IIIB, alive, 1200 days 2149.0
TCGA-HU-8610-01A 75 years, male, asian, stage:Stage IA, alive, 23 days 2143.7
TCGA-CD-8524-01A 61 years, female, asian, stage:Stage II, alive, 388 days 2107.0
TCGA-D7-A747-01A 57 years, male, white, stage:Stage IIB, dead, 255 days 2096.6
TCGA-BR-8485-01A 68 years, female, white, stage:Stage IIIC, alive, 280 days 2089.3
TCGA-HU-A4HD-01A 73 years, male, asian, stage:Stage IIIA, alive, 1016 days 2081.6
TCGA-CG-4305-01A 69 years, male, stage:Stage II, alive, 485 days 2080.6
TCGA-RD-A8MW-01A 72 years, male, white, stage:Stage IIIB, dead, 1153 days 2074.7
TCGA-VQ-AA6J-01A 75 years, male, black or african american, stage:Stage IIIB, alive, 838 days 2059.1
TCGA-VQ-AA68-01A 52 years, female, white, stage:Stage IIIC, alive, 1328 days 2058.3
TCGA-BR-8384-01A 69 years, male, white, stage:Stage IIIC, alive, 113 days 2052.9
TCGA-VQ-A94O-01A 74 years, male, black or african american, stage:Stage IIIC, dead, 640 days 2047.5
TCGA-VQ-A922-01A 70 years, male, stage:Stage IV, dead, 275 days 2039.5
TCGA-FP-A8CX-01A 60 years, male, white, stage:Stage IIIC, alive, 7 days 2036.9
TCGA-VQ-AA6G-01A 68 years, male, white, stage:Stage IIA, dead, 792 days 2035.7
TCGA-MX-A5UG-01A 78 years, male, asian, stage:Stage IIIA, dead, 113 days 2031.3
TCGA-CD-8526-01A 73 years, female, asian, stage:Stage IIIA, alive, 381 days 2027.5
TCGA-D7-6822-01A 77 years, male, white, stage:Stage IB, alive, 375 days 2024.6
TCGA-BR-A4IV-01A 47 years, male, asian, stage:Stage IIIB, dead, 869 days 2017.8
TCGA-HU-A4GD-01A 56 years, male, asian, stage:Stage IIB, alive, 692 days 2016.9
TCGA-BR-8483-01A 59 years, male, white, stage:Stage IIIA, alive, 164 days 2014.5
TCGA-HU-A4GY-01A 76 years, female, asian, stage:Stage IIIA, alive, 8 days 2003.5
TCGA-VQ-A92D-01A 67 years, male, white, stage:Stage IB, alive, 2032 days 1993.2
TCGA-BR-8369-01A 76 years, female, white, stage:Stage IIIB, alive, 427 days 1992.0
TCGA-VQ-A8DZ-01A 70 years, male, black or african american, stage:Stage IV, dead, 396 days 1970.8
TCGA-RD-A8N0-01A 53 years, female, white, stage:Stage IIIB, alive, 1236 days 1967.8
TCGA-ZA-A8F6-01A 71 years, male, white, stage:Stage IB, alive, 525 days 1961.5
TCGA-MX-A666-01A 61 years, male, white, stage:Stage IIA, alive, 427 days 1960.0
TCGA-HU-A4GU-01A 73 years, male, asian, stage:Stage IIB, alive, 200 days 1943.9
TCGA-CG-5725-01A 72 years, male, stage:Stage IB, dead, 457 days 1930.4
TCGA-BR-8590-01A 62 years, male, white, stage:Stage IIIC, dead, 284 days 1921.4
TCGA-D7-8579-01A 66 years, female, white, stage:Stage IIB, alive, 636 days 1919.9
TCGA-B7-A5TI-01A 52 years, male, white, stage:Stage IIIC, alive, 595 days 1915.9
TCGA-KB-A93J-01A 78 years, male, white, stage:Stage II, alive, 1124 days 1915.0
TCGA-BR-8683-01A 75 years, male, asian, stage:Stage IIIB, dead, 300 days 1914.2
TCGA-VQ-A91E-01A 67 years, female, white, stage:Stage IIIB, alive, 664 days 1912.8
TCGA-FP-A9TM-01A 77 years, male, white, stage:'--, alive, 189 days 1910.2
TCGA-FP-7998-01A 77 years, male, white, stage:Stage IIIC, alive, 678 days 1896.3
TCGA-HU-A4H6-01A 72 years, female, asian, stage:Stage IIIA, alive, 644 days 1889.0
TCGA-CD-8529-01A 65 years, male, asian, stage:Stage IV, alive, 374 days 1889.0
TCGA-HU-A4HB-01A 68 years, male, asian, stage:Stage IIB, dead, 477 days 1888.9
TCGA-R5-A7ZR-01A 70 years, female, black or african american, stage:Stage III, dead, 185 days 1868.6
TCGA-VQ-A8E0-01A 68 years, male, black or african american, stage:Stage IIIA, dead, 562 days 1820.2
TCGA-BR-8682-01A 52 years, male, asian, stage:Stage IIB, alive, 991 days 1808.0
TCGA-VQ-A8PD-01A 69 years, male, white, stage:Stage IIIC, dead, 496 days 1797.9
TCGA-BR-8060-01A 75 years, female, white, stage:Stage IIB, dead, 348 days 1797.5
TCGA-VQ-AA64-01A 68 years, male, white, stage:Stage IIIB, dead, 560 days 1789.2
TCGA-RD-A8MV-01A 56 years, male, white, stage:Stage IIIB, alive, 3720 days 1761.7
TCGA-KB-A93G-01A 68 years, male, white, stage:Stage IB, alive, 613 days 1760.3
TCGA-VQ-A94P-01A 57 years, male, white, stage:'--, dead, 81 days 1728.3
TCGA-CG-4477-01A 58 years, female, stage:Stage IB, alive, 942 days 1724.4
TCGA-RD-A8N9-01A 63 years, female, asian, stage:Stage II, alive, 1083 days 1714.8
TCGA-BR-A4J5-01A 56 years, male, asian, stage:Stage IIIA, alive, 862 days 1708.9
TCGA-FP-7735-01A 77 years, male, black or african american, stage:Stage IB, dead, 106 days 1703.4
TCGA-D7-A4Z0-01A 60 years, female, white, stage:Stage IIB, alive, 449 days 1700.6
TCGA-CG-4443-01A 68 years, male, stage:Stage IA, alive, 912 days 1681.6
TCGA-VQ-A927-01A 81 years, male, white, stage:Stage IIIB, dead, 200 days 1668.2
TCGA-FP-8631-01A 68 years, male, white, stage:Stage IIIA, alive, 17 days 1626.2
TCGA-CD-A4MH-01A 86 years, female, asian, stage:Stage IIA, alive, 371 days 1621.7
TCGA-BR-8373-01A 65 years, female, white, stage:Stage IIIA, alive, 450 days 1613.7
TCGA-CD-A48A-01A 57 years, male, asian, stage:Stage IIA, alive, 378 days 1586.5
TCGA-CG-4460-01A 66 years, female, stage:Stage IV, dead, 669 days 1523.8
TCGA-VQ-A91Y-01A 67 years, male, white, stage:Stage IIIC, dead, 296 days 1522.7
TCGA-CG-4466-01A 81 years, female, stage:Stage IB, alive, 577 days 1519.1
TCGA-ZQ-A9CR-01A 79 years, female, white, stage:Stage IIIC, dead, 24 days 1510.5
TCGA-VQ-AA6D-01A 52 years, female, stage:Stage IIIA, alive, 521 days 1506.1
TCGA-VQ-AA6A-01A 56 years, male, white, stage:Stage IIIC, alive, 1184 days 1505.6
TCGA-VQ-AA6K-01A 59 years, male, white, stage:Stage IIIC, dead, 378 days 1471.3
TCGA-CD-A489-01A 58 years, male, asian, stage:Stage IIA, dead, 344 days 1452.3
TCGA-D7-8578-01A 72 years, male, white, stage:Stage IB, alive, 643 days 1433.3
TCGA-VQ-A91V-01A 58 years, male, stage:Stage IIIA, alive, 1297 days 1424.2
TCGA-FP-7916-01A 77 years, male, asian, stage:Stage IIIC, dead, 428 days 1421.6
TCGA-VQ-A8PM-01A 56 years, male, white, stage:Stage IV, dead, 57 days 1419.9
TCGA-BR-A4J4-01A 39 years, male, asian, stage:Stage IIIB, alive, 16 days 1417.3
TCGA-RD-A8N4-01A 58 years, female, white, stage:Stage IIIA, alive, 2171 days 1413.0
TCGA-IN-8663-01A 68 years, male, white, stage:Stage IIB, dead, 103 days 1394.0
TCGA-HU-A4H2-01A 58 years, female, asian, stage:Stage IIIB, alive, 394 days 1387.9
TCGA-VQ-A8P5-01A 67 years, male, white, stage:Stage IIA, dead, 235 days 1374.8
TCGA-VQ-A91U-01A 78 years, male, asian, stage:Stage IIIA, dead, 52 days 1361.6
TCGA-CG-4440-01A 68 years, female, stage:Stage IV, dead, 122 days 1353.4
TCGA-CG-4475-01A 76 years, male, stage:Stage IIB, alive, 699 days 1335.7
TCGA-R5-A805-01A 71 years, male, white, stage:Stage IIIB, dead, 281 days 1224.1
TCGA-RD-A8N2-01A 59 years, female, white, stage:Stage IB, alive, 3540 days 1212.0
TCGA-BR-A4CS-01A 77 years, male, white, stage:Stage IIIC, dead, 45 days 1205.9
TCGA-CD-A486-01A 68 years, male, asian, stage:Stage IIA, dead, 192 days 1179.1
TCGA-CG-4436-01A 57 years, male, stage:Stage IB, alive, 243 days 1175.5
TCGA-D7-6520-01A 53 years, male, white, stage:Stage IIIA, alive, 573 days 1165.1
TCGA-CG-4301-01A 75 years, female, stage:Stage IV, alive, 92 days 1158.0
TCGA-VQ-A8PK-01A 58 years, male, white, stage:Stage IIIB, dead, 543 days 1118.9
TCGA-HU-A4GH-01A 75 years, male, asian, stage:Stage IA, alive, 358 days 1006.4
TCGA-BR-6710-01A 41 years, male, white, stage:Stage IB, alive, 273 days 983.7
TCGA-D7-A6F2-01A 62 years, male, white, stage:Stage IB, alive, 476 days 921.2
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STOMACH CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA055259
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Adenocarcinoma, NOS

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