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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:158.0 nTPM
HPA Brain:109.3 nTPM
GTEx:158.0 nTPM
FANTOM5:107.4 Scaled Tags Per Million
Pig:47.7 nTPM
Mouse:101.6 nTPM
Allen mouse:7.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.3
Sample id Sample description nTPM
Amygdala
nTPM: 109.3
2814 Male, age 76, right hemisphere 117.7
1987 Female, age 91, left hemisphere 110.1
2514 Male, age 75, right hemisphere 109.7
2695 Female, age 67, right hemisphere 109.2
2517 Female, age 94, left hemisphere 99.9
Basal amygdala
nTPM: 88.3
2609 Male, age 75, right hemisphere 108.7
2110 Male, age 80, left hemisphere 98.4
1955 Male, age 76, both hemispheres 93.0
2243 Female, age 91, right hemisphere 85.8
2685 Female, age 94, left hemisphere 83.0
2827 Female, age 67, right hemisphere 61.0
Central amygdala
nTPM: 103.0
1905 Male, age 76, both hemispheres 119.5
2826 Female, age 94, left hemisphere 114.4
2515 Male, age 75, right hemisphere 111.7
2239 Male, age 80, left hemisphere 93.6
2701 Female, age 91, right hemisphere 76.1
Corticomedial amygdala
nTPM: 85.4
2428 Male, age 75, right hemisphere 106.4
2829 Male, age 80, left hemisphere 90.5
2242 Female, age 91, right hemisphere 85.9
2429 Female, age 94, left hemisphere 82.2
2240 Male, age 76, both hemispheres 78.6
2535 Female, age 67, right hemisphere 68.6
Lateral amygdala
nTPM: 98.3
2534 Female, age 94, left hemisphere 114.7
2516 Male, age 75, right hemisphere 113.3
1883 Male, age 76, both hemispheres 107.4
2255 Female, age 91, right hemisphere 91.5
2256 Male, age 80, left hemisphere 90.3
2830 Female, age 67, right hemisphere 72.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 158.0
Samples: 152

Max nTPM: 343.8
Min nTPM: 74.2
Std nTPM: 43.2
Median nTPM: 154.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 343.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 331.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 310.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 303.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 278.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 232.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 226.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 223.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 222.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 216.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 214.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 210.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 206.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 203.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 202.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 199.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 199.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 199.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 198.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 198.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 195.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 194.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 194.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 191.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 191.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 191.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 190.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 189.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 188.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 186.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 184.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 184.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 182.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 182.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 180.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 179.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 178.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 177.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 176.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 174.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 174.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 174.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 172.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 172.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 172.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 171.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 171.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 171.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 171.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 170.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 169.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 169.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 165.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 165.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 165.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 164.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 163.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 162.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 162.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 162.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 161.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 160.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 160.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 160.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 160.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 159.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 159.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 159.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 157.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 157.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 157.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 155.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 155.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 155.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 155.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 155.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 154.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 154.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 154.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 154.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 153.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 152.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 151.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 151.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 149.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 148.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 148.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 147.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 147.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 146.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 146.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 145.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 145.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 144.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 142.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 142.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 141.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 141.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 141.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 141.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 138.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 138.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 138.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 137.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 136.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 135.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 134.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 132.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 131.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 130.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 130.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 130.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 129.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 129.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 127.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 127.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 127.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 127.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 123.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 121.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 120.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 120.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 119.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 118.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 118.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 117.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 117.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 113.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 112.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 112.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 110.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 110.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 109.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 108.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 108.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 106.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 106.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 105.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 102.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 99.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 97.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 97.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 94.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 93.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 89.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 88.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 74.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 107.4
FF:10151-102I7 76 years, female 107.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.7
Pig sample Sample description nTPM
Amygdala
nTPM: 47.7
Samples: 4

Max nTPM: 61.1
Min nTPM: 40.2
Sample A Female 61.1
Sample B Female 43.8
Sample C Male 45.6
Sample D Male 40.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 101.7
Samples: 4

Max nTPM: 109.4
Min nTPM: 92.6
Sample A Male 109.4
Sample B Male 105.0
Sample C Female 99.6
Sample D Female 92.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.1
68269664 Antisense, RP_041129_02_A05, Mouse strain C57BL/6J (56 days, male) 7.1

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