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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.6 nTPM
HPA Brain:62.4 nTPM
GTEx:75.6 nTPM
FANTOM5:50.0 Scaled Tags Per Million
Pig:102.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 58.9
1981 Female, age 72, midline 76.6
2565 Male, age 75, midline 67.9
2194 Female, age 79, both hemispheres 54.6
2816 Male, age 47, midline 50.0
2048 Male, age 55, midline 45.2
Cervical spinal cord, dorsal horn
nTPM: 58.2
2173 Female, age 72, unknown 78.6
2069 Male, age 47, both hemispheres 64.6
2296 Male, age 66, both hemispheres 63.9
2297 Male, age 75, both hemispheres 48.8
1877 Male, age 55, unknown 47.4
2721 Male, age 90, both hemispheres 45.8
Cervical spinal cord, ventral horn
nTPM: 62.4
2098 Female, age 72, unknown 79.4
2809 Male, age 90, both hemispheres 71.0
2480 Male, age 75, both hemispheres 64.4
2295 Male, age 66, both hemispheres 61.5
2068 Male, age 55, unknown 54.3
2820 Female, age 79, both hemispheres 44.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 75.6
Samples: 159

Max nTPM: 135.7
Min nTPM: 40.5
Std nTPM: 14.1
Median nTPM: 75.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 135.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 114.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 108.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 108.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 107.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 105.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 101.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 100.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 100.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 98.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 95.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 94.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 93.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 93.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 93.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 92.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 91.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 91.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 91.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 90.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 90.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 88.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 88.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 88.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 88.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 87.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 86.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 86.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 85.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 85.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 85.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 85.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 84.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 84.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 84.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 83.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 83.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 83.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 83.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 83.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 83.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 83.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 83.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 83.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 83.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 82.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 82.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 82.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 82.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 82.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 82.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 82.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 82.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 82.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 81.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 81.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 81.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 80.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 79.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 79.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 79.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 79.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 79.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 79.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 78.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 78.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 78.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 78.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 78.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 77.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 77.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 76.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 76.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 75.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 75.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 75.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 75.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 75.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 75.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 75.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 74.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 74.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 74.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 74.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 74.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 73.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 73.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 73.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 72.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 72.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 72.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 72.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 71.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 71.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 71.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 71.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 70.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 70.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 69.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 69.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 69.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 69.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 69.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 68.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 68.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 68.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 67.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 67.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 67.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 67.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 66.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 66.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 66.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 66.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 66.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 66.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 66.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 65.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 65.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 65.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 64.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 64.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 64.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 63.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 63.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 62.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 62.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 62.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 61.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 61.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 61.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 61.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 60.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 60.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 60.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 60.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 59.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 59.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 59.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 58.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 58.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 58.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 57.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 57.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 57.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 56.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 56.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 55.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 55.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 55.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 54.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 53.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 51.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 51.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 51.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 48.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 40.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

50.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 50.0
FF:10181-103D1 60 years, female 74.3
FF:10159-103A6 76 years, female 25.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 90.9
Samples: 4

Max nTPM: 102.0
Min nTPM: 86.1
Sample A Female 89.2
Sample B Female 86.2
Sample C Male 102.0
Sample D Male 86.1
Ventral spinal cord
nTPM: 102.1
Samples: 4

Max nTPM: 110.9
Min nTPM: 91.5
Sample A Female 101.4
Sample B Female 110.9
Sample C Male 104.6
Sample D Male 91.5

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