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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:207.6 nTPM
HPA Brain:323.2 nTPM
GTEx:207.6 nTPM
FANTOM5:303.6 Scaled Tags Per Million
Pig:251.8 nTPM
Mouse:293.5 nTPM
Allen mouse:20.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.2
Sample id Sample description nTPM
Amygdala
nTPM: 222.1
1987 Female, age 91, left hemisphere 321.7
2517 Female, age 94, left hemisphere 284.2
2814 Male, age 76, right hemisphere 238.4
2514 Male, age 75, right hemisphere 168.6
2695 Female, age 67, right hemisphere 97.6
Basal amygdala
nTPM: 320.1
2243 Female, age 91, right hemisphere 445.9
2685 Female, age 94, left hemisphere 439.2
2110 Male, age 80, left hemisphere 343.5
1955 Male, age 76, both hemispheres 283.6
2827 Female, age 67, right hemisphere 206.2
2609 Male, age 75, right hemisphere 202.2
Central amygdala
nTPM: 303.9
2826 Female, age 94, left hemisphere 410.1
2239 Male, age 80, left hemisphere 347.2
2701 Female, age 91, right hemisphere 341.4
1905 Male, age 76, both hemispheres 236.8
2515 Male, age 75, right hemisphere 184.2
Corticomedial amygdala
nTPM: 323.2
2242 Female, age 91, right hemisphere 438.2
2829 Male, age 80, left hemisphere 404.6
2429 Female, age 94, left hemisphere 345.8
2535 Female, age 67, right hemisphere 293.5
2240 Male, age 76, both hemispheres 267.3
2428 Male, age 75, right hemisphere 189.6
Lateral amygdala
nTPM: 258.8
2534 Female, age 94, left hemisphere 464.2
2255 Female, age 91, right hemisphere 311.3
1883 Male, age 76, both hemispheres 274.9
2256 Male, age 80, left hemisphere 227.2
2516 Male, age 75, right hemisphere 156.1
2830 Female, age 67, right hemisphere 119.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 207.6
Samples: 152

Max nTPM: 565.1
Min nTPM: 15.0
Std nTPM: 98.9
Median nTPM: 187.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 565.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 462.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 454.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 449.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 428.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 422.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 414.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 393.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 391.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 383.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 368.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 360.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 355.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 351.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 351.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 346.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 346.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 338.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 337.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 335.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 332.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 327.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 322.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 315.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 299.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 291.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 290.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 285.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 284.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 280.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 277.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 277.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 272.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 271.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 270.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 268.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 267.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 265.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 265.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 264.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 260.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 256.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 253.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 252.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 252.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 251.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 247.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 245.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 244.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 243.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 242.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 242.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 235.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 234.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 233.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 229.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 229.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 226.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 225.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 224.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 222.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 221.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 220.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 217.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 216.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 209.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 207.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 204.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 203.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 203.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 200.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 198.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 197.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 192.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 190.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 189.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 185.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 185.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 185.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 184.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 182.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 182.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 180.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 179.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 174.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 173.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 173.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 172.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 171.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 169.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 169.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 161.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 158.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 155.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 155.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 153.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 152.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 151.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 151.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 150.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 144.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 144.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 144.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 143.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 142.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 142.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 142.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 142.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 140.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 140.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 135.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 133.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 133.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 132.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 132.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 131.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 129.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 129.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 128.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 126.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 126.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 124.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 124.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 122.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 122.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 121.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 119.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 119.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 118.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 116.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 111.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 110.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 108.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 106.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 106.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 104.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 95.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 91.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 88.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 74.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 74.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 66.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 65.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 58.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 50.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 19.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

303.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 303.6
FF:10151-102I7 76 years, female 303.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.8
Pig sample Sample description nTPM
Amygdala
nTPM: 251.8
Samples: 4

Max nTPM: 397.6
Min nTPM: 148.5
Sample A Female 397.6
Sample B Female 148.5
Sample C Male 209.4
Sample D Male 251.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 293.5
Samples: 4

Max nTPM: 322.2
Min nTPM: 275.9
Sample A Male 322.2
Sample B Male 275.9
Sample C Female 290.4
Sample D Female 285.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.3
68843883 Antisense, RP_050217_02_E01, Mouse strain C57BL/6J (56 days, male) 20.3

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