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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:211.8 nTPM
HPA Brain:178.4 nTPM
GTEx:211.8 nTPM
FANTOM5:180.6 Scaled Tags Per Million
Pig:76.5 nTPM
Mouse:10.3 nTPM
Allen mouse:6.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.4
Sample id Sample description nTPM
Amygdala
nTPM: 170.9
2695 Female, age 67, right hemisphere 211.8
2814 Male, age 76, right hemisphere 167.3
2514 Male, age 75, right hemisphere 164.5
1987 Female, age 91, left hemisphere 161.0
2517 Female, age 94, left hemisphere 150.0
Basal amygdala
nTPM: 161.8
2609 Male, age 75, right hemisphere 200.4
2827 Female, age 67, right hemisphere 176.3
2110 Male, age 80, left hemisphere 160.9
2243 Female, age 91, right hemisphere 146.7
2685 Female, age 94, left hemisphere 146.6
1955 Male, age 76, both hemispheres 139.9
Central amygdala
nTPM: 170.9
2826 Female, age 94, left hemisphere 217.4
2515 Male, age 75, right hemisphere 195.0
2239 Male, age 80, left hemisphere 155.7
1905 Male, age 76, both hemispheres 151.9
2701 Female, age 91, right hemisphere 134.7
Corticomedial amygdala
nTPM: 145.2
2535 Female, age 67, right hemisphere 165.2
2428 Male, age 75, right hemisphere 160.4
2829 Male, age 80, left hemisphere 156.1
2242 Female, age 91, right hemisphere 139.8
2429 Female, age 94, left hemisphere 129.5
2240 Male, age 76, both hemispheres 120.5
Lateral amygdala
nTPM: 178.4
2830 Female, age 67, right hemisphere 205.2
2516 Male, age 75, right hemisphere 199.9
2534 Female, age 94, left hemisphere 173.8
2256 Male, age 80, left hemisphere 169.5
2255 Female, age 91, right hemisphere 168.9
1883 Male, age 76, both hemispheres 152.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 211.8
Samples: 152

Max nTPM: 438.4
Min nTPM: 50.7
Std nTPM: 47.4
Median nTPM: 210.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 438.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 335.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 324.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 312.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 312.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 300.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 290.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 287.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 287.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 282.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 282.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 278.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 276.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 275.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 275.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 269.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 265.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 265.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 263.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 261.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 260.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 258.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 257.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 253.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 253.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 250.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 249.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 247.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 247.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 247.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 243.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 243.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 242.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 241.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 241.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 241.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 240.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 238.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 236.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 233.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 230.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 229.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 229.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 229.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 228.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 228.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 227.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 227.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 226.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 226.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 225.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 225.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 225.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 224.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 223.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 223.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 223.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 222.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 222.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 222.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 221.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 219.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 219.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 217.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 216.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 216.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 216.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 215.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 215.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 214.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 214.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 212.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 211.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 211.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 210.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 210.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 210.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 210.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 209.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 208.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 208.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 205.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 205.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 205.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 204.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 204.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 204.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 203.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 201.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 199.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 199.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 198.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 198.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 198.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 196.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 194.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 193.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 192.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 191.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 191.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 190.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 189.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 188.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 188.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 188.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 187.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 187.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 187.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 186.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 185.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 184.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 183.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 182.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 182.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 182.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 182.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 181.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 178.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 178.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 177.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 176.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 175.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 173.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 173.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 171.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 170.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 166.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 166.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 166.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 165.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 163.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 162.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 160.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 156.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 154.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 153.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 153.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 153.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 152.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 149.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 148.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 146.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 146.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 144.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 141.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 137.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 134.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 132.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 130.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 129.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 50.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

180.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 180.6
FF:10151-102I7 76 years, female 180.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.5
Pig sample Sample description nTPM
Amygdala
nTPM: 76.5
Samples: 4

Max nTPM: 89.1
Min nTPM: 65.0
Sample A Female 89.1
Sample B Female 77.4
Sample C Male 74.5
Sample D Male 65.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 10.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 7.2
Sample A Male 12.4
Sample B Male 8.0
Sample C Female 13.7
Sample D Female 7.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
79544866 Antisense, RP_071101_01_A12, Mouse strain C57BL/6J (56 days, male) 6.7

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