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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:201.6 nTPM
HPA Brain:177.1 nTPM
GTEx:201.6 nTPM
FANTOM5:165.4 Scaled Tags Per Million
Pig:129.4 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 177.1
2565 Male, age 75, midline 218.1
1981 Female, age 72, midline 176.8
2816 Male, age 47, midline 167.2
2048 Male, age 55, midline 165.3
2194 Female, age 79, both hemispheres 157.9
Cervical spinal cord, dorsal horn
nTPM: 151.2
2173 Female, age 72, unknown 165.0
2721 Male, age 90, both hemispheres 164.7
1877 Male, age 55, unknown 152.3
2296 Male, age 66, both hemispheres 152.1
2069 Male, age 47, both hemispheres 141.7
2297 Male, age 75, both hemispheres 131.4
Cervical spinal cord, ventral horn
nTPM: 168.6
2809 Male, age 90, both hemispheres 193.6
2480 Male, age 75, both hemispheres 189.2
2295 Male, age 66, both hemispheres 180.5
2098 Female, age 72, unknown 169.7
2068 Male, age 55, unknown 146.3
2820 Female, age 79, both hemispheres 132.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 201.6
Samples: 159

Max nTPM: 318.8
Min nTPM: 126.4
Std nTPM: 37.5
Median nTPM: 199.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 318.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 310.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 294.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 287.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 282.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 269.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 261.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 261.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 259.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 257.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 256.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 255.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 255.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 253.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 250.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 249.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 248.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 247.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 246.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 245.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 242.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 242.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 241.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 241.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 239.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 239.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 239.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 238.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 237.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 236.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 235.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 234.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 233.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 233.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 232.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 232.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 231.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 231.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 230.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 230.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 229.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 228.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 228.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 227.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 227.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 225.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 223.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 223.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 223.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 221.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 221.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 218.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 217.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 216.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 216.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 215.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 214.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 213.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 213.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 212.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 211.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 211.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 211.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 209.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 209.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 208.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 207.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 204.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 204.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 204.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 204.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 203.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 202.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 201.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 201.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 200.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 200.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 200.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 199.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 199.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 198.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 198.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 198.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 197.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 197.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 195.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 194.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 194.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 192.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 192.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 192.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 191.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 191.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 190.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 190.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 189.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 189.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 189.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 188.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 187.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 187.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 186.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 182.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 182.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 182.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 182.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 182.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 180.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 180.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 180.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 180.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 178.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 178.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 178.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 178.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 177.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 176.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 175.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 175.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 175.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 175.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 171.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 171.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 170.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 169.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 167.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 166.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 165.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 165.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 164.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 163.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 163.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 163.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 162.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 160.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 160.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 160.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 157.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 157.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 156.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 155.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 154.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 154.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 153.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 153.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 153.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 149.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 148.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 147.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 146.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 144.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 143.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 141.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 140.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 136.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 132.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 127.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 126.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

165.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 165.4
FF:10159-103A6 76 years, female 203.4
FF:10181-103D1 60 years, female 127.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 107.8
Samples: 4

Max nTPM: 118.6
Min nTPM: 95.4
Sample A Female 95.4
Sample B Female 109.0
Sample C Male 118.6
Sample D Male 108.2
Ventral spinal cord
nTPM: 129.4
Samples: 4

Max nTPM: 135.6
Min nTPM: 117.2
Sample A Female 117.2
Sample B Female 130.6
Sample C Male 134.2
Sample D Male 135.6

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