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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:42.5 nTPM
HPA Brain:114.0 nTPM
GTEx:42.5 nTPM
FANTOM5:25.4 Scaled Tags Per Million
Pig:54.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 85.7
2194 Female, age 79, both hemispheres 131.9
2565 Male, age 75, midline 77.8
1981 Female, age 72, midline 75.1
2048 Male, age 55, midline 73.6
2816 Male, age 47, midline 70.0
Cervical spinal cord, dorsal horn
nTPM: 59.7
2173 Female, age 72, unknown 89.6
2297 Male, age 75, both hemispheres 68.8
1877 Male, age 55, unknown 64.7
2721 Male, age 90, both hemispheres 62.9
2069 Male, age 47, both hemispheres 43.1
2296 Male, age 66, both hemispheres 29.1
Cervical spinal cord, ventral horn
nTPM: 114.0
2820 Female, age 79, both hemispheres 188.1
2068 Male, age 55, unknown 139.9
2480 Male, age 75, both hemispheres 113.1
2809 Male, age 90, both hemispheres 101.3
2295 Male, age 66, both hemispheres 83.0
2098 Female, age 72, unknown 58.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 42.5
Samples: 159

Max nTPM: 190.8
Min nTPM: 10.4
Std nTPM: 26.6
Median nTPM: 35.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 190.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 152.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 145.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 130.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 96.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 95.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 94.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 91.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 91.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 88.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 83.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 82.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 79.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 77.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 72.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 69.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 69.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 67.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 66.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 65.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 65.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 64.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 64.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 62.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 60.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 59.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 59.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 59.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 59.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 58.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 58.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 58.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 56.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 56.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 56.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 55.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 53.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 53.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 53.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 52.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 52.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 52.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 52.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 49.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 49.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 48.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 48.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 48.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 48.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 46.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 46.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 45.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 45.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 44.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 44.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 43.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 43.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 42.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 42.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 42.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 42.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 41.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 41.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 41.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 40.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 39.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 39.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 39.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 39.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 38.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 38.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 37.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 36.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 36.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 36.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 36.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 36.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 36.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 35.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 35.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 35.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 35.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 34.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 34.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 33.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 33.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 32.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 32.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 32.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 32.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 31.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 31.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 31.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 31.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 31.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 31.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 31.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 31.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 31.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 31.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 31.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 31.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 30.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 30.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 30.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 30.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 29.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 28.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 28.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 27.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 26.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 26.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 26.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 26.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 25.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 25.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 25.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 24.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 24.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 24.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 24.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 24.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 23.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 23.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 23.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 22.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 22.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 22.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 21.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 21.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 21.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 21.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 20.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 20.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 20.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 20.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 19.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 19.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 19.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 19.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 19.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 19.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 19.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 18.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 18.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 17.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 17.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 15.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 15.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 14.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 14.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 14.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 13.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 12.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 11.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 11.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 11.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 10.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 25.4
FF:10181-103D1 60 years, female 34.2
FF:10159-103A6 76 years, female 16.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 44.3
Samples: 4

Max nTPM: 73.2
Min nTPM: 18.3
Sample A Female 73.2
Sample B Female 18.3
Sample C Male 24.2
Sample D Male 61.4
Ventral spinal cord
nTPM: 54.0
Samples: 4

Max nTPM: 73.1
Min nTPM: 25.3
Sample A Female 61.0
Sample B Female 56.4
Sample C Male 73.1
Sample D Male 25.3

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