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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:190.7 nTPM
HPA Brain:132.0 nTPM
GTEx:190.7 nTPM
FANTOM5:359.1 Scaled Tags Per Million
Pig:67.7 nTPM
Mouse:61.2 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.0
Sample id Sample description nTPM
Amygdala
nTPM: 132.0
2514 Male, age 75, right hemisphere 155.8
1987 Female, age 91, left hemisphere 135.9
2517 Female, age 94, left hemisphere 130.8
2695 Female, age 67, right hemisphere 119.9
2814 Male, age 76, right hemisphere 117.4
Basal amygdala
nTPM: 110.3
2609 Male, age 75, right hemisphere 162.2
2243 Female, age 91, right hemisphere 128.4
1955 Male, age 76, both hemispheres 103.8
2110 Male, age 80, left hemisphere 99.0
2685 Female, age 94, left hemisphere 92.0
2827 Female, age 67, right hemisphere 76.6
Central amygdala
nTPM: 118.2
2515 Male, age 75, right hemisphere 134.7
2701 Female, age 91, right hemisphere 125.9
1905 Male, age 76, both hemispheres 117.7
2239 Male, age 80, left hemisphere 113.0
2826 Female, age 94, left hemisphere 99.8
Corticomedial amygdala
nTPM: 118.2
2428 Male, age 75, right hemisphere 152.1
2242 Female, age 91, right hemisphere 130.3
2429 Female, age 94, left hemisphere 125.6
2829 Male, age 80, left hemisphere 120.1
2240 Male, age 76, both hemispheres 113.7
2535 Female, age 67, right hemisphere 67.5
Lateral amygdala
nTPM: 112.8
2516 Male, age 75, right hemisphere 165.2
2255 Female, age 91, right hemisphere 114.0
2830 Female, age 67, right hemisphere 101.5
1883 Male, age 76, both hemispheres 101.3
2256 Male, age 80, left hemisphere 101.1
2534 Female, age 94, left hemisphere 93.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 190.7
Samples: 152

Max nTPM: 423.1
Min nTPM: 38.7
Std nTPM: 70.6
Median nTPM: 181.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 423.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 402.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 398.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 395.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 391.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 377.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 368.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 339.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 299.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 297.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 296.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 279.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 279.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 275.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 274.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 272.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 267.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 265.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 265.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 263.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 259.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 254.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 252.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 251.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 251.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 250.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 248.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 245.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 244.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 240.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 239.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 238.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 237.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 236.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 236.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 235.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 233.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 233.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 232.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 230.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 228.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 226.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 223.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 220.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 220.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 219.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 217.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 215.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 212.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 211.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 211.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 211.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 210.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 209.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 207.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 205.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 203.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 201.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 201.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 200.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 199.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 199.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 198.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 197.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 196.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 195.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 194.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 191.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 191.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 190.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 185.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 182.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 182.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 181.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 181.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 180.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 180.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 180.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 178.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 177.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 177.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 172.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 171.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 169.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 168.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 166.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 165.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 163.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 162.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 162.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 161.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 160.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 159.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 158.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 157.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 156.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 156.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 156.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 153.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 153.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 152.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 151.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 151.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 150.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 149.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 149.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 148.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 147.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 147.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 144.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 143.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 143.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 140.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 140.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 136.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 135.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 133.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 132.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 132.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 132.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 131.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 130.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 127.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 125.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 125.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 121.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 120.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 118.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 118.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 114.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 112.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 112.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 110.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 108.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 108.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 106.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 105.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 101.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 100.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 100.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 99.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 97.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 94.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 85.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 85.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 79.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 38.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

359.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 359.1
FF:10151-102I7 76 years, female 359.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.7
Pig sample Sample description nTPM
Amygdala
nTPM: 67.7
Samples: 4

Max nTPM: 80.3
Min nTPM: 54.2
Sample A Female 69.7
Sample B Female 80.3
Sample C Male 66.6
Sample D Male 54.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 61.2
Samples: 4

Max nTPM: 75.8
Min nTPM: 47.6
Sample A Male 47.6
Sample B Male 58.9
Sample C Female 75.8
Sample D Female 62.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
68162244 Antisense, RP_041122_02_D10, Mouse strain C57BL/6J (56 days, male) 0.0

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