MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA Brain:116.9 nTPM
GTEx:45.6 nTPM
FANTOM5:77.8 Scaled Tags Per Million
Pig:130.1 nTPM
Mouse:100.6 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 116.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.8
2666 Male, age 74, left hemisphere 134.5
2586 Male, age 75, left hemisphere 126.4
2828 Female, age 72, unknown 107.5
2019 Male, age 18, unknown 106.7
1827 Male, age 72, unknown 95.9
1833 Male, age 53, unknown 76.6
1870 Female, age 42, unknown 76.1
1830 Male, age 51, unknown 73.0
2219 Male, age 76, both hemispheres 71.6
2411 Female, age 72, unknown 70.0
Dorsal raphe nucleus
nTPM: 85.4
2298 Female, age 72, unknown 92.3
2047 Male, age 72, unknown 91.3
1828 Male, age 53, unknown 86.5
2016 Female, age 72, unknown 79.3
2750 Male, age 76, both hemispheres 77.7
Inferior colliculus
nTPM: 84.1
2097 Female, age 72, unknown 90.6
2849 Male, age 72, unknown 84.3
1890 Male, age 53, unknown 81.1
1848 Female, age 42, unknown 80.2
Median raphe nucleus
nTPM: 94.8
2220 Male, age 76, midline 94.8
Periaquaductal grey, anterior
nTPM: 97.2
1795 Male, age 51, unknown 114.4
1947 Male, age 18, unknown 89.3
2502 Female, age 75, unknown 87.9
Periaquaductal grey, dorsal
nTPM: 93.3
2850 Male, age 76, both hemispheres 102.9
1831 Male, age 72, unknown 102.1
1840 Male, age 53, unknown 95.7
2464 Female, age 72, unknown 72.4
Periaquaductal grey, lateral
nTPM: 98.1
2272 Male, age 74, both hemispheres 106.3
2140 Male, age 76, both hemispheres 97.5
2053 Male, age 18, unknown 90.7
Pretectal area
nTPM: 116.9
1817 Female, age 42, unknown 160.2
1816 Male, age 51, unknown 159.8
1944 Female, age 72, unknown 140.6
1815 Male, age 53, unknown 131.4
2007 Male, age 72, unknown 123.5
2273 Male, age 74, both hemispheres 102.0
2224 Female, age 72, unknown 101.0
2667 Female, age 75, unknown 100.4
2407 Male, age 75, both hemispheres 98.8
2825 Male, age 18, unknown 85.6
2316 Male, age 76, right hemisphere 82.7
Red nucleus
nTPM: 78.2
2785 Male, age 18, unknown 101.2
2725 Female, age 75, unknown 93.5
2584 Male, age 75, left hemisphere 92.0
2503 Female, age 72, unknown 80.3
1865 Male, age 51, unknown 76.6
2588 Male, age 74, left hemisphere 75.9
1821 Female, age 72, unknown 72.0
2823 Male, age 76, right hemisphere 71.4
1954 Female, age 42, unknown 70.7
2227 Male, age 72, unknown 69.1
1904 Male, age 53, unknown 68.0
2769 Male, age 72, unknown 67.9
Substantia nigra
nTPM: 96.9
2583 Male, age 75, right hemisphere 117.4
1889 Female, age 72, unknown 112.2
1916 Female, age 42, unknown 102.6
2665 Male, age 74, both hemispheres 98.3
1851 Male, age 51, unknown 97.0
1941 Male, age 53, unknown 96.4
2241 Male, age 72, unknown 89.8
2590 Female, age 75, unknown 88.4
2699 Male, age 18, unknown 86.6
2409 Female, age 72, unknown 80.5
Superior colliculus
nTPM: 103.0
2664 Male, age 75, both hemispheres 129.9
2087 Female, age 72, unknown 124.6
2261 Male, age 18, unknown 115.0
2668 Female, age 75, unknown 114.2
1796 Male, age 53, unknown 105.8
1995 Male, age 72, unknown 102.6
1913 Female, age 42, unknown 97.8
2587 Male, age 74, left hemisphere 87.8
1839 Male, age 51, unknown 84.1
1895 Male, age 76, right hemisphere 68.6
Ventral tegmental area
nTPM: 92.4
2021 Male, age 53, unknown 102.0
2223 Female, age 72, unknown 101.6
2218 Male, age 76, both hemispheres 94.9
1915 Female, age 42, unknown 86.4
2410 Female, age 72, unknown 85.6
1942 Male, age 51, unknown 83.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 139

Max nTPM: 78.8
Min nTPM: 20.6
Std nTPM: 9.2
Median nTPM: 44.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 78.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 78.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 69.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 65.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 64.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 63.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 61.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 61.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 58.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 58.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.8
FF:10158-103A5 76 years, female 77.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 130.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 113.6
Samples: 4

Max nTPM: 128.0
Min nTPM: 86.5
Sample A Female 128.0
Sample B Female 120.6
Sample C Male 119.3
Sample D Male 86.5
Midbrain
nTPM: 130.1
Samples: 4

Max nTPM: 159.9
Min nTPM: 112.9
Sample A Female 126.3
Sample B Female 121.4
Sample C Male 159.9
Sample D Male 112.9
Periaqueductal gray
nTPM: 110.1
Samples: 3

Max nTPM: 125.7
Min nTPM: 96.8
Sample B Female 107.9
Sample C Male 125.7
Sample D Male 96.8
Superior colliculi
nTPM: 128.0
Samples: 4

Max nTPM: 145.1
Min nTPM: 108.2
Sample A Female 129.4
Sample B Female 145.1
Sample C Male 129.4
Sample D Male 108.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 100.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.6
Samples: 4

Max nTPM: 105.7
Min nTPM: 97.6
Sample A Male 97.6
Sample B Male 100.5
Sample C Female 105.7
Sample D Female 98.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
2412 Antisense, RP_Baylor_102813, Mouse strain C57BL/6J (56 days, male) 7.5
2411 Antisense, RP_Baylor_102813, Mouse strain C57BL/6J (56 days, male) 0.2

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