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ATP6V0A4
HPA
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  • ATP6V0A4
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ATP6V0A4
Synonyms a4, ATP6N1B, ATP6N2, RDRTA2, RTA1C, RTADR, Stv1, Vph1, VPP2
Gene descriptioni

Full gene name according to HGNC.

ATPase H+ transporting V0 subunit a4
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Metabolic proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband q34
Chromosome location (bp) 138706294 - 138799560
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000105929 (version 109)
Entrez gene 50617
HGNC HGNC:866
UniProt Q9HBG4 (UniProt - Evidence at protein level)
neXtProt NX_Q9HBG4
GeneCards ATP6V0A4
Antibodypedia ATP6V0A4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons (By similarity). V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment (By similarity). Involved in normal vectorial acid transport into the urine by the kidney 1, 2.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Hydrogen ion transport, Ion transport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of intracellular compartments of eukaryotic cells. V-ATPase dependent acidification is necessary for such intracellular processes as protein sorting, zymogen activation, receptor-mediated endocytosis, and synaptic vesicle proton gradient generation. V-ATPase is composed of a cytosolic V1 domain and a transmembrane V0 domain. The V1 domain consists of three A and three B subunits, two G subunits plus the C, D, E, F, and H subunits. The V1 domain contains the ATP catalytic site. The V0 domain consists of five different subunits: a, c, c', c'', and d. This gene is one of four genes in man and mouse that encode different isoforms of the a subunit. Alternatively spliced transcript variants encoding the same protein have been described. Mutations in this gene are associated with renal tubular acidosis associated with preserved hearing. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ATP6V0A4-201
ENSP00000308122
ENST00000310018
Q9HBG4
[Direct mapping] V-type proton ATPase 116 kDa subunit a 4
Show all
A0A024R791
[Target identity:100%; Query identity:100%] V-type proton ATPase subunit a
Show all
Metabolic proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000220 [vacuolar proton-transporting V-type ATPase, V0 domain]
GO:0001503 [ossification]
GO:0005515 [protein binding]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005886 [plasma membrane]
GO:0005903 [brush border]
GO:0006811 [ion transport]
GO:0006885 [regulation of pH]
GO:0007035 [vacuolar acidification]
GO:0007605 [sensory perception of sound]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0016471 [vacuolar proton-transporting V-type ATPase complex]
GO:0030670 [phagocytic vesicle membrane]
GO:0030672 [synaptic vesicle membrane]
GO:0031526 [brush border membrane]
GO:0033176 [proton-transporting V-type ATPase complex]
GO:0033179 [proton-transporting V-type ATPase, V0 domain]
GO:0045177 [apical part of cell]
GO:0046961 [proton-transporting ATPase activity, rotational mechanism]
GO:0051117 [ATPase binding]
GO:0051452 [intracellular pH reduction]
GO:0070062 [extracellular exosome]
GO:0097254 [renal tubular secretion]
GO:0097401 [synaptic vesicle lumen acidification]
GO:1902600 [proton transmembrane transport]
Show all
840 aa
96.4 kDa
No 8
ATP6V0A4-202
ENSP00000253856
ENST00000353492
Q9HBG4
[Direct mapping] V-type proton ATPase 116 kDa subunit a 4
Show all
A0A024R791
[Target identity:100%; Query identity:100%] V-type proton ATPase subunit a
Show all
Metabolic proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000220 [vacuolar proton-transporting V-type ATPase, V0 domain]
GO:0001503 [ossification]
GO:0005515 [protein binding]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006885 [regulation of pH]
GO:0007035 [vacuolar acidification]
GO:0007605 [sensory perception of sound]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0016471 [vacuolar proton-transporting V-type ATPase complex]
GO:0030670 [phagocytic vesicle membrane]
GO:0031526 [brush border membrane]
GO:0033176 [proton-transporting V-type ATPase complex]
GO:0033179 [proton-transporting V-type ATPase, V0 domain]
GO:0045177 [apical part of cell]
GO:0046961 [proton-transporting ATPase activity, rotational mechanism]
GO:0051117 [ATPase binding]
GO:0051452 [intracellular pH reduction]
GO:0070062 [extracellular exosome]
GO:0097254 [renal tubular secretion]
GO:1902600 [proton transmembrane transport]
Show all
840 aa
96.4 kDa
No 8
ATP6V0A4-203
ENSP00000376774
ENST00000393054
Q9HBG4
[Direct mapping] V-type proton ATPase 116 kDa subunit a 4
Show all
A0A024R791
[Target identity:100%; Query identity:100%] V-type proton ATPase subunit a
Show all
Metabolic proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000220 [vacuolar proton-transporting V-type ATPase, V0 domain]
GO:0001503 [ossification]
GO:0005515 [protein binding]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006885 [regulation of pH]
GO:0007035 [vacuolar acidification]
GO:0007605 [sensory perception of sound]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0016471 [vacuolar proton-transporting V-type ATPase complex]
GO:0030670 [phagocytic vesicle membrane]
GO:0031526 [brush border membrane]
GO:0033176 [proton-transporting V-type ATPase complex]
GO:0033179 [proton-transporting V-type ATPase, V0 domain]
GO:0045177 [apical part of cell]
GO:0046961 [proton-transporting ATPase activity, rotational mechanism]
GO:0051117 [ATPase binding]
GO:0051452 [intracellular pH reduction]
GO:0070062 [extracellular exosome]
GO:0097254 [renal tubular secretion]
GO:1902600 [proton transmembrane transport]
Show all
840 aa
96.4 kDa
No 8
ATP6V0A4-205
ENSP00000495261
ENST00000478480
A0A2R8YE46
[Direct mapping] V-type proton ATPase subunit a
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0006811 [ion transport]
GO:0016020 [membrane]
GO:0033179 [proton-transporting V-type ATPase, V0 domain]
GO:0046961 [proton-transporting ATPase activity, rotational mechanism]
GO:1902600 [proton transmembrane transport]
Show all
456 aa
52.1 kDa
No 5
ATP6V0A4-207
ENSP00000496205
ENST00000483139
A0A2R8YGN5
[Direct mapping] V-type proton ATPase subunit a
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006811 [ion transport]
GO:0016020 [membrane]
GO:0033179 [proton-transporting V-type ATPase, V0 domain]
GO:0046961 [proton-transporting ATPase activity, rotational mechanism]
GO:1902600 [proton transmembrane transport]
Show all
171 aa
19.8 kDa
No 0
ATP6V0A4-208
ENSP00000495642
ENST00000644341
A0A2R8Y6X9
[Direct mapping] V-type proton ATPase subunit a
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Human disease related genes
   Urinary system diseases
   Kidney diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0006811 [ion transport]
GO:0016020 [membrane]
GO:0033179 [proton-transporting V-type ATPase, V0 domain]
GO:0046961 [proton-transporting ATPase activity, rotational mechanism]
GO:1902600 [proton transmembrane transport]
Show all
582 aa
66.3 kDa
No 7
ATP6V0A4-209
ENSP00000496421
ENST00000645515
Q9HBG4
[Direct mapping] V-type proton ATPase 116 kDa subunit a 4
Show all
A0A024R791
[Target identity:100%; Query identity:100%] V-type proton ATPase subunit a
Show all
Metabolic proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000220 [vacuolar proton-transporting V-type ATPase, V0 domain]
GO:0001503 [ossification]
GO:0005515 [protein binding]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006885 [regulation of pH]
GO:0007035 [vacuolar acidification]
GO:0007605 [sensory perception of sound]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0016471 [vacuolar proton-transporting V-type ATPase complex]
GO:0030670 [phagocytic vesicle membrane]
GO:0031526 [brush border membrane]
GO:0033176 [proton-transporting V-type ATPase complex]
GO:0033179 [proton-transporting V-type ATPase, V0 domain]
GO:0045177 [apical part of cell]
GO:0046961 [proton-transporting ATPase activity, rotational mechanism]
GO:0051117 [ATPase binding]
GO:0051452 [intracellular pH reduction]
GO:0070062 [extracellular exosome]
GO:0097254 [renal tubular secretion]
GO:1902600 [proton transmembrane transport]
Show all
840 aa
96.4 kDa
No 7

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