MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.6 nTPM
HPA Brain:100.5 nTPM
GTEx:44.6 nTPM
FANTOM5:40.2 Scaled Tags Per Million
Pig:83.6 nTPM
Mouse:182.8 nTPM
Allen mouse:13.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 100.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.3
2586 Male, age 75, left hemisphere 98.0
2019 Male, age 18, unknown 96.4
2828 Female, age 72, unknown 92.6
2666 Male, age 74, left hemisphere 89.6
2411 Female, age 72, unknown 83.9
1827 Male, age 72, unknown 82.5
2219 Male, age 76, both hemispheres 82.5
1833 Male, age 53, unknown 78.6
1870 Female, age 42, unknown 78.3
1830 Male, age 51, unknown 71.2
Dorsal raphe nucleus
nTPM: 92.0
1828 Male, age 53, unknown 102.7
2047 Male, age 72, unknown 99.6
2298 Female, age 72, unknown 91.3
2016 Female, age 72, unknown 89.1
2750 Male, age 76, both hemispheres 77.5
Inferior colliculus
nTPM: 81.5
1890 Male, age 53, unknown 86.2
1848 Female, age 42, unknown 82.5
2097 Female, age 72, unknown 81.0
2849 Male, age 72, unknown 76.4
Median raphe nucleus
nTPM: 79.9
2220 Male, age 76, midline 79.9
Periaquaductal grey, anterior
nTPM: 82.1
1795 Male, age 51, unknown 84.6
1947 Male, age 18, unknown 81.5
2502 Female, age 75, unknown 80.2
Periaquaductal grey, dorsal
nTPM: 79.6
2850 Male, age 76, both hemispheres 90.5
1840 Male, age 53, unknown 79.7
2464 Female, age 72, unknown 74.2
1831 Male, age 72, unknown 73.9
Periaquaductal grey, lateral
nTPM: 87.4
2272 Male, age 74, both hemispheres 100.4
2053 Male, age 18, unknown 81.3
2140 Male, age 76, both hemispheres 80.5
Pretectal area
nTPM: 87.1
2007 Male, age 72, unknown 97.9
1817 Female, age 42, unknown 97.8
2667 Female, age 75, unknown 97.5
1816 Male, age 51, unknown 95.8
2273 Male, age 74, both hemispheres 93.3
1944 Female, age 72, unknown 88.4
1815 Male, age 53, unknown 84.4
2224 Female, age 72, unknown 83.5
2825 Male, age 18, unknown 77.4
2316 Male, age 76, right hemisphere 73.2
2407 Male, age 75, both hemispheres 69.4
Red nucleus
nTPM: 91.8
1821 Female, age 72, unknown 109.1
2725 Female, age 75, unknown 99.4
2503 Female, age 72, unknown 98.4
1954 Female, age 42, unknown 92.7
1904 Male, age 53, unknown 91.6
2769 Male, age 72, unknown 90.9
2227 Male, age 72, unknown 89.8
2785 Male, age 18, unknown 89.4
1865 Male, age 51, unknown 89.2
2588 Male, age 74, left hemisphere 88.1
2823 Male, age 76, right hemisphere 87.9
2584 Male, age 75, left hemisphere 74.6
Substantia nigra
nTPM: 100.5
1916 Female, age 42, unknown 135.7
1851 Male, age 51, unknown 114.1
2241 Male, age 72, unknown 106.1
1941 Male, age 53, unknown 104.9
2699 Male, age 18, unknown 104.4
1889 Female, age 72, unknown 97.8
2409 Female, age 72, unknown 90.1
2665 Male, age 74, both hemispheres 86.2
2583 Male, age 75, right hemisphere 85.2
2590 Female, age 75, unknown 80.3
Superior colliculus
nTPM: 79.9
2087 Female, age 72, unknown 86.0
2664 Male, age 75, both hemispheres 84.0
2587 Male, age 74, left hemisphere 83.6
2261 Male, age 18, unknown 82.5
2668 Female, age 75, unknown 82.4
1796 Male, age 53, unknown 81.8
1895 Male, age 76, right hemisphere 79.2
1839 Male, age 51, unknown 77.6
1995 Male, age 72, unknown 73.1
1913 Female, age 42, unknown 68.9
Ventral tegmental area
nTPM: 90.3
1915 Female, age 42, unknown 104.5
2410 Female, age 72, unknown 104.2
2218 Male, age 76, both hemispheres 93.3
1942 Male, age 51, unknown 85.8
2223 Female, age 72, unknown 77.1
2021 Male, age 53, unknown 76.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.6
Samples: 139

Max nTPM: 70.9
Min nTPM: 22.5
Std nTPM: 10.9
Median nTPM: 43.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 70.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 69.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 68.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 67.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 66.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 66.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 65.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 63.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 63.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 63.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 62.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.2
FF:10158-103A5 76 years, female 40.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.9
Samples: 4

Max nTPM: 83.0
Min nTPM: 59.2
Sample A Female 83.0
Sample B Female 59.2
Sample C Male 71.6
Sample D Male 65.6
Midbrain
nTPM: 70.8
Samples: 4

Max nTPM: 81.8
Min nTPM: 57.1
Sample A Female 81.8
Sample B Female 57.1
Sample C Male 76.4
Sample D Male 67.8
Periaqueductal gray
nTPM: 51.2
Samples: 3

Max nTPM: 54.3
Min nTPM: 45.8
Sample B Female 54.3
Sample C Male 53.4
Sample D Male 45.8
Superior colliculi
nTPM: 83.6
Samples: 4

Max nTPM: 91.9
Min nTPM: 73.2
Sample A Female 91.9
Sample B Female 87.5
Sample C Male 81.8
Sample D Male 73.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 182.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 182.8
Samples: 4

Max nTPM: 190.9
Min nTPM: 172.4
Sample A Male 172.4
Sample B Male 178.7
Sample C Female 190.9
Sample D Female 189.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.5
68193022 Antisense, RP_040825_01_A12, Mouse strain C57BL/6J (56 days, male) 13.5

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