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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:84.3 nTPM
HPA Brain:69.0 nTPM
GTEx:84.3 nTPM
FANTOM5:97.4 Scaled Tags Per Million
Pig:48.7 nTPM
Mouse:246.4 nTPM
Allen mouse:14.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.0
Sample id Sample description nTPM
Amygdala
nTPM: 25.3
2517 Female, age 94, left hemisphere 50.6
1987 Female, age 91, left hemisphere 36.3
2514 Male, age 75, right hemisphere 17.3
2814 Male, age 76, right hemisphere 16.2
2695 Female, age 67, right hemisphere 6.4
Basal amygdala
nTPM: 67.3
2243 Female, age 91, right hemisphere 107.2
2685 Female, age 94, left hemisphere 87.7
2110 Male, age 80, left hemisphere 70.2
2827 Female, age 67, right hemisphere 61.2
1955 Male, age 76, both hemispheres 48.3
2609 Male, age 75, right hemisphere 29.3
Central amygdala
nTPM: 37.5
2239 Male, age 80, left hemisphere 72.1
2826 Female, age 94, left hemisphere 65.1
2701 Female, age 91, right hemisphere 20.9
2515 Male, age 75, right hemisphere 18.4
1905 Male, age 76, both hemispheres 11.2
Corticomedial amygdala
nTPM: 69.0
2535 Female, age 67, right hemisphere 102.4
2429 Female, age 94, left hemisphere 93.3
2829 Male, age 80, left hemisphere 82.2
2242 Female, age 91, right hemisphere 65.3
2240 Male, age 76, both hemispheres 45.3
2428 Male, age 75, right hemisphere 25.4
Lateral amygdala
nTPM: 46.2
2534 Female, age 94, left hemisphere 96.4
2256 Male, age 80, left hemisphere 64.7
2255 Female, age 91, right hemisphere 39.6
1883 Male, age 76, both hemispheres 31.0
2830 Female, age 67, right hemisphere 30.2
2516 Male, age 75, right hemisphere 15.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 84.3
Samples: 152

Max nTPM: 265.4
Min nTPM: 5.4
Std nTPM: 53.5
Median nTPM: 72.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 265.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 259.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 259.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 219.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 212.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 188.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 185.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 183.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 179.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 174.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 173.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 167.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 162.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 158.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 155.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 155.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 154.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 150.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 143.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 143.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 142.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 141.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 139.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 138.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 135.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 135.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 133.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 131.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 131.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 130.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 129.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 127.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 124.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 124.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 122.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 120.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 120.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 117.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 115.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 112.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 110.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 110.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 108.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 108.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 105.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 103.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 103.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 103.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 102.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 101.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 101.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 99.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 97.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 97.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 97.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 96.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 95.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 95.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 92.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 92.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 92.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 90.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 88.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 85.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 85.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 84.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 81.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 80.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 80.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 79.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 79.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 78.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 76.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 75.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 69.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 68.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 63.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 63.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 63.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 63.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 63.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 61.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 61.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 60.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 59.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 58.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 57.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 57.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 56.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 55.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 54.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 54.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 52.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 51.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 50.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 49.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 49.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 48.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 48.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 48.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 47.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 47.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 46.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 44.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 44.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 43.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 43.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 42.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 42.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 42.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 42.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 41.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 40.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 40.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 40.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 39.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 38.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 38.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 38.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 36.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 36.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 36.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 35.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 35.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 34.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 33.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 33.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 32.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 31.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 31.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 27.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 23.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 23.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 23.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 22.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 21.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 21.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 20.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 18.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 18.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 14.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 6.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 5.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 97.4
FF:10151-102I7 76 years, female 97.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.7
Pig sample Sample description nTPM
Amygdala
nTPM: 48.7
Samples: 4

Max nTPM: 68.7
Min nTPM: 34.0
Sample A Female 68.7
Sample B Female 34.0
Sample C Male 45.4
Sample D Male 46.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 246.4
Samples: 4

Max nTPM: 266.2
Min nTPM: 218.3
Sample A Male 218.3
Sample B Male 266.0
Sample C Female 266.2
Sample D Female 235.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.0
2645 Antisense, RP_Baylor_253979, Mouse strain C57BL/6J (56 days, male) 14.0
2646 Antisense, RP_Baylor_253979, Mouse strain C57BL/6J (56 days, male) 13.7

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