MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA Brain:45.5 nTPM
GTEx:28.5 nTPM
FANTOM5:98.1 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:15.4 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.4
2411 Female, age 72, unknown 45.6
1870 Female, age 42, unknown 45.5
2019 Male, age 18, unknown 43.6
1830 Male, age 51, unknown 42.9
1833 Male, age 53, unknown 42.6
2828 Female, age 72, unknown 37.1
2586 Male, age 75, left hemisphere 36.4
2666 Male, age 74, left hemisphere 32.1
1827 Male, age 72, unknown 30.4
2219 Male, age 76, both hemispheres 27.8
Dorsal raphe nucleus
nTPM: 31.4
2750 Male, age 76, both hemispheres 50.9
1828 Male, age 53, unknown 28.9
2047 Male, age 72, unknown 27.2
2298 Female, age 72, unknown 25.3
2016 Female, age 72, unknown 24.8
Inferior colliculus
nTPM: 25.6
1890 Male, age 53, unknown 28.8
1848 Female, age 42, unknown 26.3
2097 Female, age 72, unknown 23.6
2849 Male, age 72, unknown 23.5
Median raphe nucleus
nTPM: 32.0
2220 Male, age 76, midline 32.0
Periaquaductal grey, anterior
nTPM: 27.8
2502 Female, age 75, unknown 29.7
1947 Male, age 18, unknown 27.9
1795 Male, age 51, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 22.0
2464 Female, age 72, unknown 26.9
1831 Male, age 72, unknown 23.9
2850 Male, age 76, both hemispheres 22.3
1840 Male, age 53, unknown 14.9
Periaquaductal grey, lateral
nTPM: 28.9
2272 Male, age 74, both hemispheres 33.7
2053 Male, age 18, unknown 28.5
2140 Male, age 76, both hemispheres 24.4
Pretectal area
nTPM: 28.9
2316 Male, age 76, right hemisphere 35.7
2407 Male, age 75, both hemispheres 32.6
1815 Male, age 53, unknown 32.5
2007 Male, age 72, unknown 31.0
2273 Male, age 74, both hemispheres 30.9
2667 Female, age 75, unknown 30.5
1817 Female, age 42, unknown 28.4
2825 Male, age 18, unknown 28.3
2224 Female, age 72, unknown 25.9
1944 Female, age 72, unknown 21.6
1816 Male, age 51, unknown 20.7
Red nucleus
nTPM: 45.5
1865 Male, age 51, unknown 53.8
1904 Male, age 53, unknown 51.2
2769 Male, age 72, unknown 50.9
2227 Male, age 72, unknown 49.2
2823 Male, age 76, right hemisphere 47.7
2785 Male, age 18, unknown 47.1
1821 Female, age 72, unknown 46.6
2503 Female, age 72, unknown 43.8
1954 Female, age 42, unknown 42.8
2588 Male, age 74, left hemisphere 41.8
2725 Female, age 75, unknown 35.6
2584 Male, age 75, left hemisphere 35.0
Substantia nigra
nTPM: 28.0
2583 Male, age 75, right hemisphere 35.9
2590 Female, age 75, unknown 35.2
1851 Male, age 51, unknown 33.4
1889 Female, age 72, unknown 33.1
2699 Male, age 18, unknown 28.8
1941 Male, age 53, unknown 27.4
1916 Female, age 42, unknown 25.2
2665 Male, age 74, both hemispheres 20.8
2409 Female, age 72, unknown 20.7
2241 Male, age 72, unknown 19.5
Superior colliculus
nTPM: 33.8
1913 Female, age 42, unknown 51.5
1995 Male, age 72, unknown 46.4
2587 Male, age 74, left hemisphere 38.5
1895 Male, age 76, right hemisphere 32.7
1839 Male, age 51, unknown 31.9
1796 Male, age 53, unknown 30.9
2668 Female, age 75, unknown 28.4
2087 Female, age 72, unknown 27.3
2261 Male, age 18, unknown 26.1
2664 Male, age 75, both hemispheres 24.5
Ventral tegmental area
nTPM: 33.9
2223 Female, age 72, unknown 47.0
2410 Female, age 72, unknown 34.4
2021 Male, age 53, unknown 32.4
1942 Male, age 51, unknown 31.0
2218 Male, age 76, both hemispheres 30.1
1915 Female, age 42, unknown 28.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.5
Samples: 139

Max nTPM: 116.1
Min nTPM: 7.8
Std nTPM: 18.1
Median nTPM: 24.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 116.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 111.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 108.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 106.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 81.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 74.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 58.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 58.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 49.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 48.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 47.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 98.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.1
FF:10158-103A5 76 years, female 98.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.4
Samples: 4

Max nTPM: 13.5
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 10.4
Sample C Male 9.3
Sample D Male 13.5
Midbrain
nTPM: 9.2
Samples: 4

Max nTPM: 13.8
Min nTPM: 7.5
Sample A Female 13.8
Sample B Female 7.5
Sample C Male 7.9
Sample D Male 7.5
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 9.0
Min nTPM: 7.3
Sample B Female 7.3
Sample C Male 9.0
Sample D Male 8.6
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 13.6
Min nTPM: 8.1
Sample A Female 10.1
Sample B Female 13.6
Sample C Male 8.1
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 14.4
Sample A Male 14.4
Sample B Male 14.5
Sample C Female 18.2
Sample D Female 14.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69816308 Antisense, RP_050505_04_G08, Mouse strain C57BL/6J (56 days, male) 0.5

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