MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:138.0 nTPM
HPA Brain:89.9 nTPM
GTEx:138.0 nTPM
FANTOM5:7.5 Scaled Tags Per Million
Pig:116.2 nTPM
Mouse:107.1 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.5
2586 Male, age 75, left hemisphere 76.3
1827 Male, age 72, unknown 75.8
2019 Male, age 18, unknown 75.7
2666 Male, age 74, left hemisphere 67.8
1870 Female, age 42, unknown 60.8
2411 Female, age 72, unknown 60.4
1833 Male, age 53, unknown 57.2
2828 Female, age 72, unknown 56.1
2219 Male, age 76, both hemispheres 52.9
1830 Male, age 51, unknown 52.4
Dorsal raphe nucleus
nTPM: 67.0
2298 Female, age 72, unknown 76.7
1828 Male, age 53, unknown 73.0
2047 Male, age 72, unknown 66.3
2016 Female, age 72, unknown 61.3
2750 Male, age 76, both hemispheres 57.6
Inferior colliculus
nTPM: 64.1
2097 Female, age 72, unknown 76.0
1890 Male, age 53, unknown 64.6
1848 Female, age 42, unknown 60.8
2849 Male, age 72, unknown 55.0
Median raphe nucleus
nTPM: 61.0
2220 Male, age 76, midline 61.0
Periaquaductal grey, anterior
nTPM: 72.1
1947 Male, age 18, unknown 76.5
1795 Male, age 51, unknown 72.2
2502 Female, age 75, unknown 67.7
Periaquaductal grey, dorsal
nTPM: 63.5
2850 Male, age 76, both hemispheres 74.3
1840 Male, age 53, unknown 63.8
1831 Male, age 72, unknown 60.8
2464 Female, age 72, unknown 55.0
Periaquaductal grey, lateral
nTPM: 65.4
2140 Male, age 76, both hemispheres 69.0
2053 Male, age 18, unknown 67.9
2272 Male, age 74, both hemispheres 59.2
Pretectal area
nTPM: 82.2
1816 Male, age 51, unknown 108.0
1944 Female, age 72, unknown 102.7
1817 Female, age 42, unknown 97.5
1815 Male, age 53, unknown 90.5
2007 Male, age 72, unknown 85.7
2273 Male, age 74, both hemispheres 79.3
2224 Female, age 72, unknown 79.1
2667 Female, age 75, unknown 78.9
2316 Male, age 76, right hemisphere 64.3
2407 Male, age 75, both hemispheres 59.5
2825 Male, age 18, unknown 59.1
Red nucleus
nTPM: 61.0
1821 Female, age 72, unknown 93.1
2725 Female, age 75, unknown 72.2
2785 Male, age 18, unknown 66.3
2823 Male, age 76, right hemisphere 61.8
1954 Female, age 42, unknown 60.6
1865 Male, age 51, unknown 59.2
2584 Male, age 75, left hemisphere 57.6
1904 Male, age 53, unknown 56.2
2227 Male, age 72, unknown 54.6
2503 Female, age 72, unknown 53.1
2769 Male, age 72, unknown 48.7
2588 Male, age 74, left hemisphere 48.3
Substantia nigra
nTPM: 89.9
2241 Male, age 72, unknown 125.0
1916 Female, age 42, unknown 112.2
2409 Female, age 72, unknown 102.3
1851 Male, age 51, unknown 99.3
1889 Female, age 72, unknown 91.9
1941 Male, age 53, unknown 91.2
2699 Male, age 18, unknown 71.5
2590 Female, age 75, unknown 69.6
2583 Male, age 75, right hemisphere 68.1
2665 Male, age 74, both hemispheres 68.0
Superior colliculus
nTPM: 68.1
2087 Female, age 72, unknown 81.8
2261 Male, age 18, unknown 77.4
2668 Female, age 75, unknown 77.3
2587 Male, age 74, left hemisphere 71.7
1796 Male, age 53, unknown 65.5
2664 Male, age 75, both hemispheres 63.8
1913 Female, age 42, unknown 63.6
1895 Male, age 76, right hemisphere 62.3
1995 Male, age 72, unknown 60.7
1839 Male, age 51, unknown 57.3
Ventral tegmental area
nTPM: 68.4
1915 Female, age 42, unknown 81.5
2410 Female, age 72, unknown 74.0
2218 Male, age 76, both hemispheres 72.5
1942 Male, age 51, unknown 64.3
2021 Male, age 53, unknown 63.0
2223 Female, age 72, unknown 55.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 138.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 138.0
Samples: 139

Max nTPM: 256.5
Min nTPM: 67.7
Std nTPM: 36.0
Median nTPM: 134.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 256.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 234.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 230.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 229.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 226.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 215.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 214.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 210.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 202.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 201.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 201.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.5
FF:10158-103A5 76 years, female 7.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 116.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.0
Samples: 4

Max nTPM: 123.1
Min nTPM: 75.4
Sample A Female 123.1
Sample B Female 89.1
Sample C Male 96.5
Sample D Male 75.4
Midbrain
nTPM: 105.6
Samples: 4

Max nTPM: 125.2
Min nTPM: 87.4
Sample A Female 103.6
Sample B Female 87.4
Sample C Male 125.2
Sample D Male 106.3
Periaqueductal gray
nTPM: 79.0
Samples: 3

Max nTPM: 87.3
Min nTPM: 68.0
Sample B Female 68.0
Sample C Male 87.3
Sample D Male 81.8
Superior colliculi
nTPM: 116.2
Samples: 4

Max nTPM: 128.8
Min nTPM: 104.6
Sample A Female 128.8
Sample B Female 104.6
Sample C Male 123.7
Sample D Male 107.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 107.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.2
Samples: 4

Max nTPM: 109.6
Min nTPM: 104.6
Sample A Male 105.6
Sample B Male 109.6
Sample C Female 104.6
Sample D Female 108.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
564750 Antisense, RP_040826_01_C05, Mouse strain C57BL/6J (56 days, male) 3.5

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