MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.2 nTPM
HPA Brain:41.1 nTPM
GTEx:111.2 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:33.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.7
1870 Female, age 42, unknown 39.9
2828 Female, age 72, unknown 39.4
2019 Male, age 18, unknown 38.3
2411 Female, age 72, unknown 36.0
1827 Male, age 72, unknown 35.4
1833 Male, age 53, unknown 32.7
2586 Male, age 75, left hemisphere 31.0
2666 Male, age 74, left hemisphere 30.1
1830 Male, age 51, unknown 29.4
2219 Male, age 76, both hemispheres 24.5
Dorsal raphe nucleus
nTPM: 41.1
2298 Female, age 72, unknown 55.3
2047 Male, age 72, unknown 40.0
2750 Male, age 76, both hemispheres 37.8
1828 Male, age 53, unknown 37.5
2016 Female, age 72, unknown 35.1
Inferior colliculus
nTPM: 36.8
2097 Female, age 72, unknown 45.1
1890 Male, age 53, unknown 37.9
1848 Female, age 42, unknown 33.0
2849 Male, age 72, unknown 31.2
Median raphe nucleus
nTPM: 37.3
2220 Male, age 76, midline 37.3
Periaquaductal grey, anterior
nTPM: 35.1
2502 Female, age 75, unknown 38.7
1795 Male, age 51, unknown 33.8
1947 Male, age 18, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 37.5
2850 Male, age 76, both hemispheres 42.5
1840 Male, age 53, unknown 39.2
1831 Male, age 72, unknown 36.2
2464 Female, age 72, unknown 31.9
Periaquaductal grey, lateral
nTPM: 37.9
2053 Male, age 18, unknown 38.5
2272 Male, age 74, both hemispheres 38.3
2140 Male, age 76, both hemispheres 36.9
Pretectal area
nTPM: 39.2
2667 Female, age 75, unknown 44.6
1817 Female, age 42, unknown 41.5
2273 Male, age 74, both hemispheres 40.6
1815 Male, age 53, unknown 39.3
1816 Male, age 51, unknown 39.3
2224 Female, age 72, unknown 39.2
1944 Female, age 72, unknown 38.7
2407 Male, age 75, both hemispheres 37.4
2007 Male, age 72, unknown 37.3
2316 Male, age 76, right hemisphere 37.0
2825 Male, age 18, unknown 36.6
Red nucleus
nTPM: 36.4
1821 Female, age 72, unknown 43.9
1865 Male, age 51, unknown 41.5
2769 Male, age 72, unknown 38.9
1904 Male, age 53, unknown 38.5
1954 Female, age 42, unknown 38.0
2823 Male, age 76, right hemisphere 37.5
2227 Male, age 72, unknown 36.4
2785 Male, age 18, unknown 34.9
2725 Female, age 75, unknown 34.6
2503 Female, age 72, unknown 34.5
2584 Male, age 75, left hemisphere 31.1
2588 Male, age 74, left hemisphere 27.0
Substantia nigra
nTPM: 37.5
1889 Female, age 72, unknown 44.1
1851 Male, age 51, unknown 42.9
1916 Female, age 42, unknown 41.7
2409 Female, age 72, unknown 40.6
2241 Male, age 72, unknown 37.5
2699 Male, age 18, unknown 37.2
1941 Male, age 53, unknown 35.9
2590 Female, age 75, unknown 33.1
2665 Male, age 74, both hemispheres 33.0
2583 Male, age 75, right hemisphere 29.4
Superior colliculus
nTPM: 35.7
2587 Male, age 74, left hemisphere 43.1
1913 Female, age 42, unknown 41.5
1995 Male, age 72, unknown 39.3
1895 Male, age 76, right hemisphere 36.7
2261 Male, age 18, unknown 35.9
1796 Male, age 53, unknown 33.5
2087 Female, age 72, unknown 33.5
2668 Female, age 75, unknown 33.2
1839 Male, age 51, unknown 33.1
2664 Male, age 75, both hemispheres 27.5
Ventral tegmental area
nTPM: 36.7
1915 Female, age 42, unknown 40.3
2021 Male, age 53, unknown 37.9
2410 Female, age 72, unknown 37.1
2218 Male, age 76, both hemispheres 35.1
2223 Female, age 72, unknown 35.0
1942 Male, age 51, unknown 34.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 111.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.2
Samples: 139

Max nTPM: 219.7
Min nTPM: 60.7
Std nTPM: 31.2
Median nTPM: 104.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 219.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 215.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 204.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 198.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 180.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 176.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 176.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 173.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 171.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 171.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 171.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.8
FF:10158-103A5 76 years, female 70.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.8
Samples: 4

Max nTPM: 19.6
Min nTPM: 11.4
Sample A Female 19.6
Sample B Female 14.8
Sample C Male 13.3
Sample D Male 11.4
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 22.9
Min nTPM: 12.2
Sample A Female 22.9
Sample B Female 13.5
Sample C Male 13.2
Sample D Male 12.2
Periaqueductal gray
nTPM: 13.9
Samples: 3

Max nTPM: 14.6
Min nTPM: 13.4
Sample B Female 13.4
Sample C Male 14.6
Sample D Male 13.7
Superior colliculi
nTPM: 16.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 13.8
Sample A Female 19.1
Sample B Female 17.0
Sample C Male 13.8
Sample D Male 14.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.2
Samples: 4

Max nTPM: 40.3
Min nTPM: 25.8
Sample A Male 40.3
Sample B Male 26.8
Sample C Female 25.8
Sample D Female 39.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
76081908 Antisense, RP_060608_04_D10, Mouse strain C57BL/6J (56 days, male) 0.2

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