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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:284.2 nTPM
FANTOM5:31.0 Scaled Tags Per Million
Pig:220.9 nTPM
Mouse:328.8 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

284.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 161.7
2032 Female, age 42, unknown 228.7
2497 Male, age 66, unknown 163.4
2396 Male, age 61, right hemisphere 92.9
Centromedial thalamic nucleus
nTPM: 169.5
2401 Male, age 76, right hemisphere 302.2
2279 Female, age 85, left hemisphere 36.8
Habenula
nTPM: 284.2
1957 Male, age 80, both hemispheres 337.4
2203 Male, age 61, left hemisphere 307.3
2276 Male, age 66, unknown 304.7
2252 Male, age 62, unknown 187.6
Lateral geniculate body
nTPM: 227.9
2106 Female, age 67, right hemisphere 512.8
2399 Male, age 61, left hemisphere 341.9
1953 Male, age 62, unknown 303.8
2035 Female, age 72, unknown 260.0
2841 Male, age 80, both hemispheres 138.5
2857 Male, age 74, right hemisphere 115.9
2659 Male, age 66, unknown 100.7
2575 Female, age 94, right hemisphere 49.2
Lateral thalamic nuclei
nTPM: 182.5
1903 Male, age 76, left hemisphere 275.3
2577 Male, age 74, both hemispheres 218.8
2765 Female, age 67, both hemispheres 201.7
2661 Female, age 72, unknown 142.7
2573 Female, age 94, left hemisphere 74.1
Medial dorsal thalamic nucleus
nTPM: 238.6
2498 Male, age 66, unknown 417.3
1859 Male, age 76, both hemispheres 326.2
2283 Male, age 80, right hemisphere 311.9
1971 Male, age 61, right hemisphere 285.6
1810 Male, age 48, unknown 270.4
2026 Male, age 62, unknown 265.1
2492 Male, age 75, right hemisphere 247.6
2402 Female, age 67, both hemispheres 202.5
2576 Male, age 74, both hemispheres 195.0
1930 Female, age 42, unknown 193.3
2039 Female, age 72, unknown 150.6
2660 Female, age 72, unknown 132.9
2572 Female, age 94, right hemisphere 103.7
Medial geniculate body
nTPM: 166.1
1811 Female, age 42, unknown 251.2
2207 Male, age 80, right hemisphere 222.4
2217 Female, age 72, unknown 159.7
2657 Male, age 74, right hemisphere 157.8
2049 Male, age 76, both hemispheres 141.2
2650 Female, age 94, left hemisphere 139.3
2571 Male, age 75, right hemisphere 90.9
Nucleus reuniens
nTPM: 174.2
2212 Female, age 67, left hemisphere 308.1
2205 Male, age 80, left hemisphere 146.3
2210 Female, age 85, left hemisphere 68.2
Nucleus rhomboideus
nTPM: 157.0
2206 Male, age 80, both hemispheres 314.2
2280 Female, age 85, left hemisphere 80.6
2213 Female, age 67, left hemisphere 76.2
Posterior thalamic nucleus
nTPM: 176.3
2266 Male, age 76, right hemisphere 272.9
2495 Female, age 67, right hemisphere 221.5
2655 Male, age 74, right hemisphere 146.7
2649 Female, age 94, both hemispheres 64.3
Pulvinar
nTPM: 245.7
2398 Male, age 61, left hemisphere 330.9
1972 Male, age 62, unknown 321.2
2496 Female, age 67, right hemisphere 288.7
2214 Male, age 76, right hemisphere 272.3
1932 Male, age 80, right hemisphere 267.0
2582 Female, age 72, unknown 226.2
1929 Male, age 48, unknown 219.4
1899 Female, age 42, unknown 219.3
2499 Male, age 66, unknown 162.7
2724 Male, age 74, right hemisphere 149.7
Subthalamic nucleus
nTPM: 180.4
2658 Male, age 74, both hemispheres 288.3
2406 Female, age 72, unknown 246.2
2282 Male, age 61, both hemispheres 193.4
2275 Male, age 66, unknown 191.6
2779 Female, age 42, unknown 155.0
2124 Male, age 62, unknown 151.7
2216 Male, age 48, unknown 109.4
2056 Female, age 72, unknown 107.4
Ventral posterolateral thalamic nucleus
nTPM: 226.0
2740 Male, age 76, right hemisphere 345.7
2397 Male, age 61, right hemisphere 277.0
2197 Male, age 80, both hemispheres 267.7
2578 Male, age 74, both hemispheres 220.2
2581 Female, age 72, unknown 152.2
2570 Male, age 75, right hemisphere 93.2
Ventral posteromedial thalamic nucleus
nTPM: 225.4
2202 Male, age 61, left hemisphere 344.1
2758 Male, age 80, both hemispheres 270.0
2653 Male, age 74, both hemispheres 260.3
2127 Male, age 76, right hemisphere 169.6
2281 Male, age 75, right hemisphere 82.9
Ventral thalamic nuclei
nTPM: 184.3
1860 Male, age 76, both hemispheres 269.9
1845 Male, age 48, unknown 246.5
2285 Male, age 62, unknown 205.5
1912 Female, age 42, unknown 203.7
2204 Male, age 80, both hemispheres 185.9
2858 Female, age 72, unknown 179.1
2652 Male, age 74, left hemisphere 151.1
2291 Female, age 72, unknown 123.1
2580 Male, age 66, unknown 93.9
Zona incerta
nTPM: 155.2
2208 Male, age 80, right hemisphere 224.1
2822 Male, age 74, right hemisphere 159.2
2215 Male, age 66, unknown 141.5
2663 Female, age 72, unknown 125.7
2403 Male, age 62, unknown 125.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 31.0
FF:10154-103A1 76 years, female 31.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.9
Pig sample Sample description nTPM
Thalamus
nTPM: 220.9
Samples: 4

Max nTPM: 321.8
Min nTPM: 81.1
Sample A Female 321.8
Sample B Female 228.4
Sample C Male 252.2
Sample D Male 81.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

328.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 328.8
Samples: 4

Max nTPM: 372.8
Min nTPM: 277.3
Sample A Male 277.3
Sample B Male 372.8
Sample C Female 298.7
Sample D Female 366.5

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