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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:134.5 nTPM
FANTOM5:316.1 Scaled Tags Per Million
Pig:141.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA019713Antibody CAB018587
Glial cells Not detectedNot detected
Neuronal cells HighMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 134.5
Samples: 246

Max nTPM: 349.1
Min nTPM: 33.8
Std nTPM: 52.9
Median nTPM: 132.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 349.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 316.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 299.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 276.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 250.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 250.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 248.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 233.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 232.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 231.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 230.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 230.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 224.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 223.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 222.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 218.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 218.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 217.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 216.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 215.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 211.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 211.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 209.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 208.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 205.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 204.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 202.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 201.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 201.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 198.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 196.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 195.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 194.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 192.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 192.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 187.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 186.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 185.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 183.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 182.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 181.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 181.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 181.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 180.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 178.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 177.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 176.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 175.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 174.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 174.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 173.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 173.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 173.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 171.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 171.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 169.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 168.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 166.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 166.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 164.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 164.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 164.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 163.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 163.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 163.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 163.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 162.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 161.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 161.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 161.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 160.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 159.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 158.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 158.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 157.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 157.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 155.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 155.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 153.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 153.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 153.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 152.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 151.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 151.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 150.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 150.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 149.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 149.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 148.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 148.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 148.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 147.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 147.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 146.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 146.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 145.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 144.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 143.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 143.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 143.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 142.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 141.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 141.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 140.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 140.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 140.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 140.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 139.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 139.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 139.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 138.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 138.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 138.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 137.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 137.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 137.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 135.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 134.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 134.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 134.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 133.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 133.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 133.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 131.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 131.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 130.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 127.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 127.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 127.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 127.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 125.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 125.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 124.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 123.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 123.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 122.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 122.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 122.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 120.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 120.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 119.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 119.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 118.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 118.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 118.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 117.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 116.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 116.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 115.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 114.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 114.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 114.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 113.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 112.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 112.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 111.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 111.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 110.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 110.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 109.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 109.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 108.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 107.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 106.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 106.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 106.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 105.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 104.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 104.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 104.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 103.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 102.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 102.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 102.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 101.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 101.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 100.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 100.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 99.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 98.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 98.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 97.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 97.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 97.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 97.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 97.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 96.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 96.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 96.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 94.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 94.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 94.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 93.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 93.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 93.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 92.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 90.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 87.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 87.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 86.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 86.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 86.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 85.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 84.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 83.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 82.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 81.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 78.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 78.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 77.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 76.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 75.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 75.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 75.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 75.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 75.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 74.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 74.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 74.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 73.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 73.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 71.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 70.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 70.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 67.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 65.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 64.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 64.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 62.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 61.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 60.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 57.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 57.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 56.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 56.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 51.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 48.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 47.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 45.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 43.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 43.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 42.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 40.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 34.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 33.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

316.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 316.1
FF:10164-103B2 76 years, female 316.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.1
Pig sample Sample description nTPM
Caudate
nTPM: 141.1
Samples: 4

Max nTPM: 168.5
Min nTPM: 112.6
Sample A Female 112.6
Sample B Female 149.7
Sample C Male 168.5
Sample D Male 133.7

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