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EDF1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:361.2 nTPM
FANTOM5:349.1 Scaled Tags Per Million
Pig:71.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035642
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 361.2
Samples: 246

Max nTPM: 726.0
Min nTPM: 199.3
Std nTPM: 82.3
Median nTPM: 343.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 726.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 695.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 654.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 614.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 607.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 574.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 566.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 554.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 549.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 530.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 525.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 514.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 506.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 504.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 498.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 494.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 494.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 488.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 485.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 484.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 475.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 474.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 473.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 470.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 470.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 467.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 463.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 458.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 457.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 457.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 451.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 450.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 450.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 441.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 440.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 438.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 435.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 432.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 431.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 431.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 426.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 426.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 425.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 424.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 423.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 423.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 420.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 420.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 418.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 417.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 417.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 415.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 410.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 410.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 409.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 407.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 404.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 404.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 404.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 401.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 399.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 398.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 396.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 395.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 394.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 394.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 392.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 390.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 389.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 388.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 388.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 388.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 386.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 386.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 385.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 385.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 384.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 382.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 382.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 381.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 380.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 380.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 375.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 374.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 374.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 373.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 373.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 371.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 368.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 367.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 367.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 367.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 366.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 365.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 361.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 361.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 361.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 360.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 360.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 357.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 357.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 356.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 355.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 355.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 354.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 353.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 351.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 349.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 349.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 349.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 349.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 348.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 348.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 348.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 347.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 347.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 347.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 346.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 346.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 345.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 344.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 344.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 343.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 342.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 342.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 342.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 342.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 341.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 341.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 341.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 341.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 341.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 339.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 339.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 339.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 339.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 338.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 338.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 338.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 337.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 336.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 336.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 335.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 334.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 334.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 334.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 334.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 334.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 333.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 333.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 332.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 332.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 332.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 331.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 331.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 331.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 331.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 331.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 330.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 329.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 325.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 324.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 322.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 322.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 322.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 322.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 321.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 321.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 321.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 320.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 320.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 320.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 319.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 318.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 318.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 316.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 316.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 316.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 316.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 315.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 314.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 314.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 314.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 313.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 312.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 312.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 311.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 308.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 308.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 307.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 307.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 304.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 301.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 301.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 300.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 299.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 298.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 297.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 297.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 297.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 296.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 295.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 294.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 294.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 294.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 293.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 292.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 292.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 291.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 291.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 288.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 287.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 285.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 284.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 281.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 281.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 280.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 280.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 279.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 278.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 277.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 276.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 274.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 273.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 269.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 269.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 268.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 266.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 266.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 263.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 262.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 260.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 257.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 254.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 252.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 247.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 246.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 237.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 234.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 227.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 224.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 221.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 215.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 206.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 203.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 199.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

349.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 349.1
FF:10164-103B2 76 years, female 349.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.4
Pig sample Sample description nTPM
Caudate
nTPM: 71.4
Samples: 4

Max nTPM: 85.4
Min nTPM: 61.8
Sample A Female 63.1
Sample B Female 75.1
Sample C Male 85.4
Sample D Male 61.8

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