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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:332.6 nTPM
GTEx:332.6 nTPM
FANTOM5:458.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035642
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 332.6
Samples: 156

Max nTPM: 1157.0
Min nTPM: 193.9
Std nTPM: 92.1
Median nTPM: 328.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1157.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 544.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 527.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 489.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 478.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 473.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 472.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 454.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 439.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 435.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 434.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 424.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 423.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 421.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 420.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 417.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 413.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 410.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 406.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 404.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 398.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 398.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 390.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 389.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 381.6
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 380.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 380.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 379.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 378.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 378.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 377.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 375.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 374.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 373.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 373.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 369.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 368.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 365.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 365.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 363.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 361.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 361.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 360.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 359.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 358.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 357.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 355.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 355.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 355.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 355.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 354.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 353.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 353.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 349.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 347.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 346.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 346.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 344.0
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 343.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 343.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 343.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 343.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 342.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 340.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 339.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 338.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 337.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 336.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 336.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 336.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 333.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 332.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 332.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 332.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 331.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 330.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 329.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 329.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 327.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 320.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 319.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 315.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 313.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 312.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 312.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 309.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 309.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 308.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 308.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 307.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 306.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 306.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 304.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 304.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 302.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 301.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 300.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 300.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 299.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 298.4
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 297.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 294.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 294.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 294.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 293.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 293.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 291.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 291.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 290.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 290.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 289.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 289.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 289.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 288.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 284.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 284.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 282.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 282.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 281.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 277.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 276.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 275.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 275.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 275.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 273.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 271.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 270.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 269.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 267.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 265.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 264.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 263.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 263.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 262.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 260.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 258.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 254.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 253.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 252.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 251.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 251.7
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 247.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 246.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 246.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 245.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 244.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 243.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 239.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 235.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 234.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 233.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 216.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 212.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 208.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 198.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 193.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

458.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 458.7
FF:10204-103F6 68 years, female 458.7

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