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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:172.9 nTPM
GTEx:411.6 nTPM
FANTOM5:441.6 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035642
Glial cells Low
Neuronal cells High



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.9
Sample id Sample description nTPM
Hippocampus
nTPM: 172.9
2529 Female, age 94, left hemisphere 196.4
2621 Female, age 67, right hemisphere 196.0
1898 Male, age 80, left hemisphere 177.5
1855 Male, age 76, left hemisphere 163.5
2148 Female, age 91, left hemisphere 157.0
1911 Female, age 85, right hemisphere 146.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

411.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 411.6
Samples: 197

Max nTPM: 895.0
Min nTPM: 199.1
Std nTPM: 101.5
Median nTPM: 397.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 895.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 806.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 770.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 749.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 684.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 633.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 631.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 631.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 630.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 604.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 567.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 567.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 556.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 554.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 548.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 544.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 544.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 542.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 541.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 532.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 531.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 521.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 519.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 515.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 513.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 506.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 506.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 502.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 501.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 497.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 497.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 489.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 487.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 483.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 483.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 483.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 482.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 479.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 478.2
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 476.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 473.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 472.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 472.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 469.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 465.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 463.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 463.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 457.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 456.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 454.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 454.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 453.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 453.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 451.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 451.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 446.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 446.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 445.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 443.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 443.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 442.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 441.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 438.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 437.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 435.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 435.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 434.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 434.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 432.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 430.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 427.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 423.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 421.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 421.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 420.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 419.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 418.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 415.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 415.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 415.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 414.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 411.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 411.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 410.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 409.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 409.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 409.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 408.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 407.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 406.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 406.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 405.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 403.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 401.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 400.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 398.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 398.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 398.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 397.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 397.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 397.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 395.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 392.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 391.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 391.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 390.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 390.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 389.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 389.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 381.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 379.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 378.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 377.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 376.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 373.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 373.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 373.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 372.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 372.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 370.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 370.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 368.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 367.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 366.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 366.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 365.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 365.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 365.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 364.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 364.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 364.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 364.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 363.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 363.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 362.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 362.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 362.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 361.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 360.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 357.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 356.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 355.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 352.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 351.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 351.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 349.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 349.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 348.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 348.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 347.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 345.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 345.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 343.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 340.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 340.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 338.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 338.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 338.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 337.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 337.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 334.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 333.7
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 332.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 331.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 330.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 330.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 327.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 323.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 322.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 321.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 320.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 319.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 318.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 315.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 312.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 309.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 309.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 306.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 300.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 296.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 296.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 295.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 295.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 293.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 289.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 288.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 282.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 276.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 276.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 275.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 265.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 259.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 258.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 248.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 217.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 209.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 199.1
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

441.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 441.6
FF:10169-103B7 60 years, female 550.4
FF:10153-102I9 76 years, female 332.9

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