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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
77.6
Sample id
Sample description
nTPM
Amygdala nTPM: 53.7
2814
Male, age 76, right hemisphere
72.9
1987
Female, age 91, left hemisphere
68.9
2517
Female, age 94, left hemisphere
51.2
2695
Female, age 67, right hemisphere
38.7
2514
Male, age 75, right hemisphere
36.9
Basal amygdala nTPM: 73.6
2243
Female, age 91, right hemisphere
129.1
2110
Male, age 80, left hemisphere
88.5
2685
Female, age 94, left hemisphere
78.4
1955
Male, age 76, both hemispheres
70.8
2609
Male, age 75, right hemisphere
43.0
2827
Female, age 67, right hemisphere
31.7
Central amygdala nTPM: 61.2
2239
Male, age 80, left hemisphere
84.7
1905
Male, age 76, both hemispheres
73.0
2515
Male, age 75, right hemisphere
58.9
2826
Female, age 94, left hemisphere
45.3
2701
Female, age 91, right hemisphere
44.0
Corticomedial amygdala nTPM: 77.6
2829
Male, age 80, left hemisphere
122.0
2242
Female, age 91, right hemisphere
91.1
2429
Female, age 94, left hemisphere
80.5
2240
Male, age 76, both hemispheres
66.2
2428
Male, age 75, right hemisphere
55.1
2535
Female, age 67, right hemisphere
50.5
Lateral amygdala nTPM: 53.8
2534
Female, age 94, left hemisphere
94.2
1883
Male, age 76, both hemispheres
93.7
2256
Male, age 80, left hemisphere
54.7
2255
Female, age 91, right hemisphere
36.3
2516
Male, age 75, right hemisphere
26.7
2830
Female, age 67, right hemisphere
17.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 53.4
Samples: 152
Max nTPM: 182.6
Min nTPM: 4.3
Std nTPM: 34.9
Median nTPM: 47.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
182.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
171.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
144.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
134.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
129.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
124.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
124.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
124.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
123.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
113.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
113.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
112.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
111.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
107.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
107.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
101.1
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
100.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
99.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
99.6
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
99.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
96.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
94.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
90.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
88.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
86.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
85.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
81.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
80.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
79.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
78.0
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
77.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
77.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
76.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
75.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
74.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
74.1
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
74.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
73.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
73.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
73.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
71.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
70.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
70.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
69.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
67.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
66.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
66.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
66.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
65.4
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
63.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
62.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
62.7
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
61.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
61.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
59.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
58.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
57.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
57.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
56.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
56.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
56.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
54.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
53.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
53.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
52.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
52.2
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
51.4
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
50.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
49.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
48.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
48.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
48.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
48.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
47.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
47.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
47.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
47.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
46.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
45.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
45.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
45.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
43.8
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
41.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
41.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
41.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
40.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
40.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
39.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
37.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
36.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
36.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
35.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
35.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
34.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
34.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
34.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
33.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
33.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
33.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
32.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
32.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
30.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
30.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
30.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
28.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
28.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
28.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
27.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
27.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
26.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
26.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
26.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
25.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
25.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
25.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
24.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
23.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
23.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
23.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
23.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
23.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
23.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
22.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
21.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
21.3
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
21.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
20.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
20.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
20.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
20.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
19.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
19.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
18.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
18.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
18.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
17.4
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
17.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
16.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
16.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
16.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
15.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
14.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
14.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
14.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
13.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
12.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
11.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
9.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
8.0
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
5.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
4.5
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
4.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
195.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 195.2
Samples: 4
Max nTPM: 205.4
Min nTPM: 183.6
Sample A
Male
202.8
Sample B
Male
205.4
Sample C
Female
183.6
Sample D
Female
188.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
