MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA Brain:65.5 nTPM
GTEx:29.9 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:100.6 nTPM
Mouse:182.6 nTPM
Allen mouse:11.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 65.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.8
2019 Male, age 18, unknown 75.1
2586 Male, age 75, left hemisphere 58.1
1827 Male, age 72, unknown 53.7
2219 Male, age 76, both hemispheres 42.1
2828 Female, age 72, unknown 40.1
2666 Male, age 74, left hemisphere 37.2
2411 Female, age 72, unknown 32.6
1870 Female, age 42, unknown 30.8
1830 Male, age 51, unknown 29.5
1833 Male, age 53, unknown 28.7
Dorsal raphe nucleus
nTPM: 37.2
1828 Male, age 53, unknown 53.7
2298 Female, age 72, unknown 45.0
2047 Male, age 72, unknown 36.6
2016 Female, age 72, unknown 28.9
2750 Male, age 76, both hemispheres 22.0
Inferior colliculus
nTPM: 50.3
2097 Female, age 72, unknown 66.8
1848 Female, age 42, unknown 47.5
1890 Male, age 53, unknown 44.9
2849 Male, age 72, unknown 41.9
Median raphe nucleus
nTPM: 22.7
2220 Male, age 76, midline 22.7
Periaquaductal grey, anterior
nTPM: 52.7
2502 Female, age 75, unknown 57.5
1795 Male, age 51, unknown 53.9
1947 Male, age 18, unknown 46.8
Periaquaductal grey, dorsal
nTPM: 37.2
2464 Female, age 72, unknown 40.3
1840 Male, age 53, unknown 40.1
2850 Male, age 76, both hemispheres 34.4
1831 Male, age 72, unknown 33.8
Periaquaductal grey, lateral
nTPM: 40.2
2272 Male, age 74, both hemispheres 42.9
2053 Male, age 18, unknown 38.9
2140 Male, age 76, both hemispheres 38.6
Pretectal area
nTPM: 65.5
1816 Male, age 51, unknown 105.1
1817 Female, age 42, unknown 92.9
2007 Male, age 72, unknown 91.7
1944 Female, age 72, unknown 89.5
2667 Female, age 75, unknown 67.4
1815 Male, age 53, unknown 65.1
2273 Male, age 74, both hemispheres 53.3
2407 Male, age 75, both hemispheres 45.6
2224 Female, age 72, unknown 41.1
2825 Male, age 18, unknown 35.1
2316 Male, age 76, right hemisphere 33.6
Red nucleus
nTPM: 48.4
2785 Male, age 18, unknown 66.2
1821 Female, age 72, unknown 66.1
1954 Female, age 42, unknown 54.1
1865 Male, age 51, unknown 53.3
2769 Male, age 72, unknown 49.8
2227 Male, age 72, unknown 49.4
2823 Male, age 76, right hemisphere 46.0
2503 Female, age 72, unknown 43.2
2584 Male, age 75, left hemisphere 40.6
2725 Female, age 75, unknown 40.3
1904 Male, age 53, unknown 39.9
2588 Male, age 74, left hemisphere 32.1
Substantia nigra
nTPM: 38.1
1889 Female, age 72, unknown 72.0
1941 Male, age 53, unknown 46.6
2590 Female, age 75, unknown 42.0
2583 Male, age 75, right hemisphere 39.3
1916 Female, age 42, unknown 37.4
2665 Male, age 74, both hemispheres 37.2
1851 Male, age 51, unknown 31.0
2241 Male, age 72, unknown 27.7
2409 Female, age 72, unknown 26.3
2699 Male, age 18, unknown 21.3
Superior colliculus
nTPM: 49.4
2087 Female, age 72, unknown 74.9
2261 Male, age 18, unknown 62.7
2664 Male, age 75, both hemispheres 62.2
1796 Male, age 53, unknown 50.2
1895 Male, age 76, right hemisphere 49.6
1839 Male, age 51, unknown 41.8
2668 Female, age 75, unknown 39.9
1913 Female, age 42, unknown 39.3
2587 Male, age 74, left hemisphere 37.8
1995 Male, age 72, unknown 35.8
Ventral tegmental area
nTPM: 31.8
2410 Female, age 72, unknown 39.8
2223 Female, age 72, unknown 35.9
2218 Male, age 76, both hemispheres 32.0
1915 Female, age 42, unknown 29.5
1942 Male, age 51, unknown 28.8
2021 Male, age 53, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.9
Samples: 139

Max nTPM: 124.3
Min nTPM: 1.8
Std nTPM: 18.3
Median nTPM: 26.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 124.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 115.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 97.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 81.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 72.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 65.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 63.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 49.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 49.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.3
FF:10158-103A5 76 years, female 7.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 100.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.0
Samples: 4

Max nTPM: 72.7
Min nTPM: 25.8
Sample A Female 72.7
Sample B Female 32.8
Sample C Male 48.7
Sample D Male 25.8
Midbrain
nTPM: 78.4
Samples: 4

Max nTPM: 141.8
Min nTPM: 41.5
Sample A Female 41.5
Sample B Female 45.0
Sample C Male 141.8
Sample D Male 85.2
Periaqueductal gray
nTPM: 43.6
Samples: 3

Max nTPM: 51.4
Min nTPM: 39.6
Sample B Female 39.6
Sample C Male 51.4
Sample D Male 39.7
Superior colliculi
nTPM: 100.7
Samples: 4

Max nTPM: 161.1
Min nTPM: 76.3
Sample A Female 83.8
Sample B Female 76.3
Sample C Male 161.1
Sample D Male 81.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 182.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 182.6
Samples: 4

Max nTPM: 190.5
Min nTPM: 171.4
Sample A Male 171.4
Sample B Male 190.1
Sample C Female 190.5
Sample D Female 178.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.9
74581397 Antisense, RP_060117_02_C06, Mouse strain C57BL/6J (56 days, male) 16.9
68196982 Antisense, RP_040928_01_B03, Mouse strain C57BL/6J (56 days, male) 6.9

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