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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:189.4 nTPM
HPA Brain:426.1 nTPM
GTEx:189.4 nTPM
FANTOM5:345.8 Scaled Tags Per Million
Pig:267.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

426.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 367.4
2816 Male, age 47, midline 434.2
2194 Female, age 79, both hemispheres 409.8
1981 Female, age 72, midline 394.6
2565 Male, age 75, midline 311.4
2048 Male, age 55, midline 287.3
Cervical spinal cord, dorsal horn
nTPM: 420.4
2296 Male, age 66, both hemispheres 795.9
2173 Female, age 72, unknown 515.7
2069 Male, age 47, both hemispheres 380.2
1877 Male, age 55, unknown 348.1
2297 Male, age 75, both hemispheres 245.8
2721 Male, age 90, both hemispheres 236.8
Cervical spinal cord, ventral horn
nTPM: 426.1
2068 Male, age 55, unknown 531.5
2820 Female, age 79, both hemispheres 482.4
2098 Female, age 72, unknown 439.6
2480 Male, age 75, both hemispheres 384.4
2809 Male, age 90, both hemispheres 367.5
2295 Male, age 66, both hemispheres 351.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 189.4
Samples: 159

Max nTPM: 596.9
Min nTPM: 46.8
Std nTPM: 90.3
Median nTPM: 177.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 596.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 502.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 406.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 390.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 388.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 384.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 377.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 374.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 369.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 354.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 349.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 335.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 326.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 322.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 320.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 295.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 293.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 290.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 285.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 278.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 278.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 274.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 273.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 270.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 268.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 262.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 259.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 257.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 255.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 253.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 253.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 251.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 250.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 248.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 247.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 247.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 245.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 242.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 241.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 239.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 235.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 232.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 232.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 230.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 229.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 229.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 229.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 228.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 223.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 222.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 219.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 219.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 216.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 215.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 213.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 212.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 209.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 206.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 204.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 204.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 203.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 203.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 201.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 201.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 200.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 199.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 198.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 194.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 194.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 194.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 188.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 186.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 186.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 184.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 184.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 183.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 182.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 180.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 180.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 177.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 175.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 175.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 174.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 174.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 173.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 173.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 173.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 173.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 170.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 168.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 166.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 163.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 160.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 158.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 156.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 152.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 152.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 150.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 147.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 145.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 142.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 142.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 141.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 141.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 140.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 139.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 139.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 137.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 136.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 135.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 134.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 134.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 134.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 132.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 131.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 130.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 130.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 129.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 129.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 122.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 117.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 115.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 113.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 112.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 112.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 112.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 111.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 110.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 108.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 108.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 107.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 107.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 106.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 102.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 101.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 98.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 96.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 96.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 95.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 91.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 87.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 87.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 86.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 86.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 85.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 83.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 81.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 79.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 77.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 74.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 72.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 69.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 61.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 58.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 51.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 50.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 46.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

345.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 345.8
FF:10181-103D1 60 years, female 426.4
FF:10159-103A6 76 years, female 265.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 227.4
Samples: 4

Max nTPM: 288.4
Min nTPM: 175.6
Sample A Female 288.4
Sample B Female 209.7
Sample C Male 175.6
Sample D Male 235.7
Ventral spinal cord
nTPM: 267.8
Samples: 4

Max nTPM: 329.8
Min nTPM: 227.5
Sample A Female 329.8
Sample B Female 227.5
Sample C Male 248.8
Sample D Male 265.0

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