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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:100.5 nTPM
HPA Brain:141.1 nTPM
GTEx:100.5 nTPM
FANTOM5:198.6 Scaled Tags Per Million
Pig:74.3 nTPM
Mouse:145.2 nTPM
Allen mouse:0.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.1
Sample id Sample description nTPM
Amygdala
nTPM: 141.1
2814 Male, age 76, right hemisphere 163.5
2514 Male, age 75, right hemisphere 155.0
1987 Female, age 91, left hemisphere 144.9
2695 Female, age 67, right hemisphere 124.2
2517 Female, age 94, left hemisphere 118.1
Basal amygdala
nTPM: 127.1
2609 Male, age 75, right hemisphere 147.3
2110 Male, age 80, left hemisphere 145.5
1955 Male, age 76, both hemispheres 143.3
2243 Female, age 91, right hemisphere 131.9
2685 Female, age 94, left hemisphere 108.3
2827 Female, age 67, right hemisphere 86.4
Central amygdala
nTPM: 134.4
2515 Male, age 75, right hemisphere 150.6
1905 Male, age 76, both hemispheres 141.5
2239 Male, age 80, left hemisphere 131.4
2826 Female, age 94, left hemisphere 125.4
2701 Female, age 91, right hemisphere 123.1
Corticomedial amygdala
nTPM: 130.9
2428 Male, age 75, right hemisphere 151.1
2829 Male, age 80, left hemisphere 146.4
2240 Male, age 76, both hemispheres 138.8
2242 Female, age 91, right hemisphere 132.9
2429 Female, age 94, left hemisphere 113.0
2535 Female, age 67, right hemisphere 102.9
Lateral amygdala
nTPM: 122.2
1883 Male, age 76, both hemispheres 142.3
2534 Female, age 94, left hemisphere 138.5
2516 Male, age 75, right hemisphere 136.6
2256 Male, age 80, left hemisphere 120.7
2255 Female, age 91, right hemisphere 118.7
2830 Female, age 67, right hemisphere 76.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 100.5
Samples: 152

Max nTPM: 254.5
Min nTPM: 43.0
Std nTPM: 27.8
Median nTPM: 99.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 254.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 171.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 168.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 165.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 153.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 149.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 147.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 143.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 140.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 140.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 140.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 138.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 138.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 133.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 133.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 130.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 130.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 128.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 128.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 128.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 128.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 128.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 125.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 123.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 123.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 123.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 123.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 122.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 120.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 120.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 120.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 119.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 118.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 116.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 116.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 116.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 115.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 115.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 114.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 113.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 112.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 112.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 112.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 112.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 111.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 111.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 110.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 109.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 109.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 108.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 107.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 107.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 106.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 106.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 106.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 105.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 105.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 105.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 105.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 104.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 103.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 101.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 101.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 101.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 100.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 100.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 100.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 100.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 99.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 99.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 99.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 99.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 97.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 97.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 96.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 96.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 95.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 95.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 95.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 95.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 94.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 93.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 93.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 93.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 92.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 92.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 92.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 91.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 89.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 89.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 88.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 88.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 87.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 87.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 87.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 86.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 86.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 83.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 83.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 83.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 83.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 82.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 82.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 81.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 81.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 81.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 80.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 79.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 79.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 79.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 78.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 78.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 78.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 76.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 75.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 74.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 74.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 74.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 73.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 73.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 72.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 72.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 71.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 70.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 70.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 70.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 69.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 69.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 67.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 67.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 66.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 64.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 62.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 61.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 59.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 58.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 54.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 52.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 51.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 43.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

198.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 198.6
FF:10151-102I7 76 years, female 198.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.3
Pig sample Sample description nTPM
Amygdala
nTPM: 74.3
Samples: 4

Max nTPM: 88.7
Min nTPM: 67.5
Sample A Female 88.7
Sample B Female 72.4
Sample C Male 67.5
Sample D Male 68.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 145.2
Samples: 4

Max nTPM: 150.2
Min nTPM: 142.2
Sample A Male 144.2
Sample B Male 150.2
Sample C Female 142.2
Sample D Female 144.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.5
1138 Antisense, RP_Baylor_103133, Mouse strain C57BL/6J (56 days, male) 0.5
1140 Antisense, RP_Baylor_103133, Mouse strain C57BL/6J (56 days, male) 0.0

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