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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.8 nTPM
HPA Brain:105.0 nTPM
GTEx:75.8 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:41.6 nTPM
Mouse:26.9 nTPM
Allen mouse:6.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.0
Sample id Sample description nTPM
Amygdala
nTPM: 78.4
2517 Female, age 94, left hemisphere 93.4
2814 Male, age 76, right hemisphere 80.3
1987 Female, age 91, left hemisphere 78.8
2695 Female, age 67, right hemisphere 70.5
2514 Male, age 75, right hemisphere 68.9
Basal amygdala
nTPM: 105.0
2827 Female, age 67, right hemisphere 133.9
2685 Female, age 94, left hemisphere 113.7
2110 Male, age 80, left hemisphere 103.5
2243 Female, age 91, right hemisphere 100.1
2609 Male, age 75, right hemisphere 92.9
1955 Male, age 76, both hemispheres 85.9
Central amygdala
nTPM: 89.5
2826 Female, age 94, left hemisphere 113.1
2239 Male, age 80, left hemisphere 94.4
2515 Male, age 75, right hemisphere 87.1
1905 Male, age 76, both hemispheres 78.1
2701 Female, age 91, right hemisphere 75.0
Corticomedial amygdala
nTPM: 93.0
2535 Female, age 67, right hemisphere 131.7
2829 Male, age 80, left hemisphere 102.9
2429 Female, age 94, left hemisphere 89.7
2242 Female, age 91, right hemisphere 85.1
2428 Male, age 75, right hemisphere 84.4
2240 Male, age 76, both hemispheres 64.2
Lateral amygdala
nTPM: 97.0
2830 Female, age 67, right hemisphere 114.7
2534 Female, age 94, left hemisphere 111.3
2256 Male, age 80, left hemisphere 105.6
2255 Female, age 91, right hemisphere 93.2
1883 Male, age 76, both hemispheres 79.5
2516 Male, age 75, right hemisphere 77.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 75.8
Samples: 152

Max nTPM: 138.2
Min nTPM: 26.7
Std nTPM: 21.5
Median nTPM: 74.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 138.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 129.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 125.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 118.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 117.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 117.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 109.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 109.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 108.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 107.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 107.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 107.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 107.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 105.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 103.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 102.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 101.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 101.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 100.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 100.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 100.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 99.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 98.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 97.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 96.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 95.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 95.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 92.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 92.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 92.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 92.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 92.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 89.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 88.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 88.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 88.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 87.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 87.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 86.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 86.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 86.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 85.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 85.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 84.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 84.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 84.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 84.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 82.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 81.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 81.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 80.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 80.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 80.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 80.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 80.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 80.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 79.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 79.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 79.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 79.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 79.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 79.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 79.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 77.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 77.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 76.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 76.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 75.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 75.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 75.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 75.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 75.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 74.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 74.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 73.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 73.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 73.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 72.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 72.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 72.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 71.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 71.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 71.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 71.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 70.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 70.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 70.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 70.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 69.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 68.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 67.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 67.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 66.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 64.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 64.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 63.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 62.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 62.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 62.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 62.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 62.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 61.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 60.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 60.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 60.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 59.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 59.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 58.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 58.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 58.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 57.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 57.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 57.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 57.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 57.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 56.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 56.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 55.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 54.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 54.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 54.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 54.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 53.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 53.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 50.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 50.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 50.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 50.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 50.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 48.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 44.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 44.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 43.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 43.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 42.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 41.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 41.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 41.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 39.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 39.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 36.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 35.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 34.2
FF:10151-102I7 76 years, female 34.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.6
Pig sample Sample description nTPM
Amygdala
nTPM: 41.6
Samples: 4

Max nTPM: 48.0
Min nTPM: 34.9
Sample A Female 45.7
Sample B Female 37.8
Sample C Male 48.0
Sample D Male 34.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 26.9
Samples: 4

Max nTPM: 30.0
Min nTPM: 23.1
Sample A Male 23.1
Sample B Male 29.1
Sample C Female 30.0
Sample D Female 25.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.6
69671666 Antisense, RP_050428_02_A08, Mouse strain C57BL/6J (56 days, male) 6.6

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