MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.1 nTPM
HPA Brain:24.8 nTPM
GTEx:64.1 nTPM
FANTOM5:25.7 Scaled Tags Per Million
Pig:121.0 nTPM
Mouse:17.4 nTPM
Allen mouse:18.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
1870 Female, age 42, unknown 22.0
2666 Male, age 74, left hemisphere 19.5
1830 Male, age 51, unknown 19.4
2411 Female, age 72, unknown 16.0
1833 Male, age 53, unknown 15.2
2828 Female, age 72, unknown 12.5
2019 Male, age 18, unknown 11.5
1827 Male, age 72, unknown 10.8
2586 Male, age 75, left hemisphere 9.9
2219 Male, age 76, both hemispheres 9.6
Dorsal raphe nucleus
nTPM: 16.7
2047 Male, age 72, unknown 21.9
2298 Female, age 72, unknown 18.0
2016 Female, age 72, unknown 17.7
1828 Male, age 53, unknown 15.8
2750 Male, age 76, both hemispheres 10.4
Inferior colliculus
nTPM: 19.6
1890 Male, age 53, unknown 40.9
2097 Female, age 72, unknown 12.5
1848 Female, age 42, unknown 12.4
2849 Male, age 72, unknown 12.4
Median raphe nucleus
nTPM: 19.2
2220 Male, age 76, midline 19.2
Periaquaductal grey, anterior
nTPM: 14.8
1795 Male, age 51, unknown 16.4
1947 Male, age 18, unknown 15.8
2502 Female, age 75, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 15.5
2850 Male, age 76, both hemispheres 19.5
1831 Male, age 72, unknown 17.8
2464 Female, age 72, unknown 14.1
1840 Male, age 53, unknown 10.5
Periaquaductal grey, lateral
nTPM: 17.1
2272 Male, age 74, both hemispheres 21.7
2140 Male, age 76, both hemispheres 16.7
2053 Male, age 18, unknown 12.9
Pretectal area
nTPM: 12.8
2825 Male, age 18, unknown 17.5
1817 Female, age 42, unknown 16.1
2224 Female, age 72, unknown 16.0
2407 Male, age 75, both hemispheres 13.4
1944 Female, age 72, unknown 13.0
2273 Male, age 74, both hemispheres 12.9
2316 Male, age 76, right hemisphere 12.7
2667 Female, age 75, unknown 11.7
1815 Male, age 53, unknown 9.8
2007 Male, age 72, unknown 9.3
1816 Male, age 51, unknown 7.8
Red nucleus
nTPM: 16.9
2769 Male, age 72, unknown 24.1
2227 Male, age 72, unknown 24.0
2503 Female, age 72, unknown 18.0
1821 Female, age 72, unknown 17.0
2588 Male, age 74, left hemisphere 16.9
2785 Male, age 18, unknown 16.3
1904 Male, age 53, unknown 15.0
1954 Female, age 42, unknown 14.9
2584 Male, age 75, left hemisphere 14.7
2823 Male, age 76, right hemisphere 14.4
2725 Female, age 75, unknown 14.2
1865 Male, age 51, unknown 13.3
Substantia nigra
nTPM: 17.0
2665 Male, age 74, both hemispheres 33.4
2590 Female, age 75, unknown 20.6
1851 Male, age 51, unknown 19.3
2409 Female, age 72, unknown 19.1
2699 Male, age 18, unknown 16.5
2583 Male, age 75, right hemisphere 13.9
2241 Male, age 72, unknown 12.9
1941 Male, age 53, unknown 12.5
1916 Female, age 42, unknown 11.4
1889 Female, age 72, unknown 10.4
Superior colliculus
nTPM: 15.2
2087 Female, age 72, unknown 29.6
2587 Male, age 74, left hemisphere 16.9
2668 Female, age 75, unknown 16.9
2261 Male, age 18, unknown 15.1
1839 Male, age 51, unknown 14.2
1913 Female, age 42, unknown 12.9
1995 Male, age 72, unknown 12.5
1895 Male, age 76, right hemisphere 11.9
1796 Male, age 53, unknown 11.6
2664 Male, age 75, both hemispheres 10.3
Ventral tegmental area
nTPM: 24.8
1915 Female, age 42, unknown 30.9
2021 Male, age 53, unknown 30.1
1942 Male, age 51, unknown 26.6
2218 Male, age 76, both hemispheres 22.4
2410 Female, age 72, unknown 20.9
2223 Female, age 72, unknown 18.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 64.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.1
Samples: 139

Max nTPM: 2327.3
Min nTPM: 8.8
Std nTPM: 195.4
Median nTPM: 40.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 2327.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 247.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 161.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 143.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 132.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 113.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 112.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 103.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 97.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 96.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 96.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.7
FF:10158-103A5 76 years, female 25.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 121.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 121.0
Samples: 4

Max nTPM: 327.8
Min nTPM: 24.9
Sample A Female 76.8
Sample B Female 327.8
Sample C Male 24.9
Sample D Male 54.4
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 46.1
Min nTPM: 13.1
Sample A Female 40.4
Sample B Female 24.6
Sample C Male 46.1
Sample D Male 13.1
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 12.5
Min nTPM: 3.3
Sample B Female 12.5
Sample C Male 7.7
Sample D Male 3.3
Superior colliculi
nTPM: 59.8
Samples: 4

Max nTPM: 71.8
Min nTPM: 38.5
Sample A Female 71.8
Sample B Female 66.1
Sample C Male 38.5
Sample D Male 62.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 23.3
Min nTPM: 14.6
Sample A Male 23.3
Sample B Male 15.9
Sample C Female 14.6
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.4
68743877 Antisense, RP_050203_01_G07, Mouse strain C57BL/6J (56 days, male) 18.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org