MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.5 nTPM
HPA Brain:25.4 nTPM
GTEx:32.5 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:51.0 nTPM
Mouse:59.9 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.5
2019 Male, age 18, unknown 24.7
2411 Female, age 72, unknown 24.7
1827 Male, age 72, unknown 23.9
1830 Male, age 51, unknown 23.4
1870 Female, age 42, unknown 23.3
1833 Male, age 53, unknown 23.2
2828 Female, age 72, unknown 21.5
2666 Male, age 74, left hemisphere 21.3
2219 Male, age 76, both hemispheres 19.6
2586 Male, age 75, left hemisphere 19.3
Dorsal raphe nucleus
nTPM: 22.9
1828 Male, age 53, unknown 24.1
2016 Female, age 72, unknown 24.1
2750 Male, age 76, both hemispheres 23.2
2298 Female, age 72, unknown 22.4
2047 Male, age 72, unknown 20.8
Inferior colliculus
nTPM: 23.7
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 23.9
2097 Female, age 72, unknown 23.6
2849 Male, age 72, unknown 23.1
Median raphe nucleus
nTPM: 23.6
2220 Male, age 76, midline 23.6
Periaquaductal grey, anterior
nTPM: 22.8
2502 Female, age 75, unknown 24.3
1947 Male, age 18, unknown 23.1
1795 Male, age 51, unknown 20.9
Periaquaductal grey, dorsal
nTPM: 25.1
2850 Male, age 76, both hemispheres 28.2
1831 Male, age 72, unknown 24.9
2464 Female, age 72, unknown 24.1
1840 Male, age 53, unknown 23.1
Periaquaductal grey, lateral
nTPM: 23.6
2140 Male, age 76, both hemispheres 24.6
2272 Male, age 74, both hemispheres 23.4
2053 Male, age 18, unknown 22.8
Pretectal area
nTPM: 25.4
1816 Male, age 51, unknown 30.6
1815 Male, age 53, unknown 29.6
1944 Female, age 72, unknown 29.2
1817 Female, age 42, unknown 26.1
2007 Male, age 72, unknown 25.1
2273 Male, age 74, both hemispheres 24.6
2667 Female, age 75, unknown 24.6
2224 Female, age 72, unknown 23.5
2407 Male, age 75, both hemispheres 22.7
2316 Male, age 76, right hemisphere 22.6
2825 Male, age 18, unknown 20.8
Red nucleus
nTPM: 24.9
1821 Female, age 72, unknown 27.9
2503 Female, age 72, unknown 27.8
2725 Female, age 75, unknown 27.2
2823 Male, age 76, right hemisphere 26.9
1904 Male, age 53, unknown 25.9
1865 Male, age 51, unknown 25.1
1954 Female, age 42, unknown 25.1
2227 Male, age 72, unknown 23.5
2785 Male, age 18, unknown 23.5
2588 Male, age 74, left hemisphere 23.4
2769 Male, age 72, unknown 22.6
2584 Male, age 75, left hemisphere 20.0
Substantia nigra
nTPM: 24.0
2409 Female, age 72, unknown 27.1
1889 Female, age 72, unknown 26.5
2241 Male, age 72, unknown 25.1
1941 Male, age 53, unknown 24.3
2699 Male, age 18, unknown 24.0
1851 Male, age 51, unknown 23.1
1916 Female, age 42, unknown 23.1
2590 Female, age 75, unknown 22.8
2665 Male, age 74, both hemispheres 22.7
2583 Male, age 75, right hemisphere 21.0
Superior colliculus
nTPM: 24.7
1995 Male, age 72, unknown 28.9
2261 Male, age 18, unknown 28.9
1913 Female, age 42, unknown 28.8
2087 Female, age 72, unknown 27.4
2587 Male, age 74, left hemisphere 24.2
1895 Male, age 76, right hemisphere 23.6
1839 Male, age 51, unknown 23.0
2668 Female, age 75, unknown 22.5
1796 Male, age 53, unknown 21.3
2664 Male, age 75, both hemispheres 19.0
Ventral tegmental area
nTPM: 23.4
2410 Female, age 72, unknown 25.3
2218 Male, age 76, both hemispheres 24.6
2223 Female, age 72, unknown 24.5
1915 Female, age 42, unknown 23.0
1942 Male, age 51, unknown 21.7
2021 Male, age 53, unknown 21.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.5
Samples: 139

Max nTPM: 66.3
Min nTPM: 20.6
Std nTPM: 6.6
Median nTPM: 31.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 51.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 51.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 50.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 47.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 45.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 44.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 43.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 42.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 41.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.5
FF:10158-103A5 76 years, female 91.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.4
Samples: 4

Max nTPM: 55.3
Min nTPM: 34.7
Sample A Female 55.3
Sample B Female 41.1
Sample C Male 46.5
Sample D Male 34.7
Midbrain
nTPM: 49.5
Samples: 4

Max nTPM: 57.7
Min nTPM: 45.1
Sample A Female 57.7
Sample B Female 45.1
Sample C Male 46.7
Sample D Male 48.6
Periaqueductal gray
nTPM: 45.5
Samples: 3

Max nTPM: 49.9
Min nTPM: 41.1
Sample B Female 41.1
Sample C Male 49.9
Sample D Male 45.6
Superior colliculi
nTPM: 51.0
Samples: 4

Max nTPM: 61.2
Min nTPM: 45.9
Sample A Female 61.2
Sample B Female 45.9
Sample C Male 47.9
Sample D Male 49.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 59.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.8
Samples: 4

Max nTPM: 60.2
Min nTPM: 59.5
Sample A Male 60.0
Sample B Male 60.2
Sample C Female 59.6
Sample D Female 59.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69105321 Antisense, RP_050316_02_B12, Mouse strain C57BL/6J (56 days, male) 6.2

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