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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2054.2 nTPM
GTEx:2054.2 nTPM
FANTOM5:21.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043014
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2054.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2054.2
Samples: 156

Max nTPM: 4448.1
Min nTPM: 1232.3
Std nTPM: 455.9
Median nTPM: 1967.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4448.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3868.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3133.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3114.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3041.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2960.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2883.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2872.5
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2838.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2820.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2806.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2786.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2753.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2694.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2688.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2596.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2528.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2525.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2501.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2501.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2483.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2480.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2477.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2476.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2453.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2441.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2435.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2414.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2367.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2342.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2337.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2336.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2333.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2319.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2301.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2283.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2275.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2275.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2270.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2266.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2261.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2257.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2255.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2252.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2242.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2234.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2224.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2222.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2220.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2213.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2195.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2165.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2163.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2157.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2154.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2152.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2146.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2140.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2136.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2126.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2120.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2102.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2080.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2078.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2074.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2067.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2056.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2033.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2020.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2009.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2004.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1991.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1989.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1987.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1986.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1979.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1972.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1967.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1967.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1958.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1947.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1943.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1939.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1935.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1933.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1926.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1923.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1920.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1909.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1905.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1888.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1882.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1874.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1871.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1841.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1839.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1838.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1837.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1833.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1831.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1831.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1828.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1826.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1825.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1822.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1815.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1809.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1804.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1801.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 1793.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1792.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1785.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1769.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1765.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1761.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1746.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1741.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1741.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1736.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1723.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1708.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1704.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1700.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1693.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1684.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1678.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1675.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1663.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1657.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1654.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1646.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1635.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1635.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1628.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1625.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 1621.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1605.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1602.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1596.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1595.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1572.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1568.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1561.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1559.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1553.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1543.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1538.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1537.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1516.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1514.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1473.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1442.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1427.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1409.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1334.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1232.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 21.2
FF:10204-103F6 68 years, female 21.2

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