MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.5 nTPM
HPA Brain:71.1 nTPM
GTEx:92.5 nTPM
FANTOM5:73.5 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:85.7 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
1827 Male, age 72, unknown 59.0
2411 Female, age 72, unknown 58.0
2019 Male, age 18, unknown 57.8
2828 Female, age 72, unknown 56.0
1870 Female, age 42, unknown 54.6
1833 Male, age 53, unknown 51.1
1830 Male, age 51, unknown 47.3
2586 Male, age 75, left hemisphere 46.2
2219 Male, age 76, both hemispheres 39.7
2666 Male, age 74, left hemisphere 35.0
Dorsal raphe nucleus
nTPM: 62.1
2298 Female, age 72, unknown 84.4
1828 Male, age 53, unknown 57.3
2750 Male, age 76, both hemispheres 57.3
2016 Female, age 72, unknown 56.0
2047 Male, age 72, unknown 55.7
Inferior colliculus
nTPM: 54.9
2097 Female, age 72, unknown 69.5
1890 Male, age 53, unknown 53.3
1848 Female, age 42, unknown 51.7
2849 Male, age 72, unknown 45.1
Median raphe nucleus
nTPM: 63.4
2220 Male, age 76, midline 63.4
Periaquaductal grey, anterior
nTPM: 58.1
1947 Male, age 18, unknown 62.2
1795 Male, age 51, unknown 58.6
2502 Female, age 75, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 56.8
2850 Male, age 76, both hemispheres 70.6
1840 Male, age 53, unknown 55.0
2464 Female, age 72, unknown 51.0
1831 Male, age 72, unknown 50.7
Periaquaductal grey, lateral
nTPM: 71.1
2272 Male, age 74, both hemispheres 87.8
2140 Male, age 76, both hemispheres 69.8
2053 Male, age 18, unknown 55.8
Pretectal area
nTPM: 64.3
2273 Male, age 74, both hemispheres 89.0
2667 Female, age 75, unknown 71.1
2224 Female, age 72, unknown 67.1
1816 Male, age 51, unknown 66.0
2316 Male, age 76, right hemisphere 65.2
1944 Female, age 72, unknown 64.2
1817 Female, age 42, unknown 63.6
2007 Male, age 72, unknown 62.4
1815 Male, age 53, unknown 59.6
2825 Male, age 18, unknown 52.6
2407 Male, age 75, both hemispheres 46.2
Red nucleus
nTPM: 54.6
1821 Female, age 72, unknown 65.8
2725 Female, age 75, unknown 65.6
2227 Male, age 72, unknown 57.4
1865 Male, age 51, unknown 56.9
1904 Male, age 53, unknown 56.7
1954 Female, age 42, unknown 56.5
2785 Male, age 18, unknown 56.5
2503 Female, age 72, unknown 55.7
2823 Male, age 76, right hemisphere 55.7
2769 Male, age 72, unknown 53.1
2588 Male, age 74, left hemisphere 38.7
2584 Male, age 75, left hemisphere 36.3
Substantia nigra
nTPM: 58.9
2241 Male, age 72, unknown 79.6
1916 Female, age 42, unknown 74.6
1851 Male, age 51, unknown 65.8
1889 Female, age 72, unknown 64.0
1941 Male, age 53, unknown 58.6
2409 Female, age 72, unknown 58.2
2699 Male, age 18, unknown 53.1
2590 Female, age 75, unknown 52.2
2583 Male, age 75, right hemisphere 45.4
2665 Male, age 74, both hemispheres 37.8
Superior colliculus
nTPM: 53.9
2261 Male, age 18, unknown 67.0
1796 Male, age 53, unknown 63.7
2587 Male, age 74, left hemisphere 62.4
2087 Female, age 72, unknown 60.4
1839 Male, age 51, unknown 50.6
1895 Male, age 76, right hemisphere 50.6
1913 Female, age 42, unknown 49.2
2668 Female, age 75, unknown 46.6
1995 Male, age 72, unknown 46.1
2664 Male, age 75, both hemispheres 41.9
Ventral tegmental area
nTPM: 59.3
2410 Female, age 72, unknown 66.1
1915 Female, age 42, unknown 65.6
2218 Male, age 76, both hemispheres 60.8
2223 Female, age 72, unknown 58.6
2021 Male, age 53, unknown 53.3
1942 Male, age 51, unknown 51.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 92.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.5
Samples: 139

Max nTPM: 166.6
Min nTPM: 47.5
Std nTPM: 20.1
Median nTPM: 89.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 166.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 162.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 156.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 150.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 138.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 135.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 124.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 123.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 123.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 122.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 122.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 73.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.5
FF:10158-103A5 76 years, female 73.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.2
Samples: 4

Max nTPM: 60.2
Min nTPM: 36.3
Sample A Female 60.2
Sample B Female 36.3
Sample C Male 44.2
Sample D Male 39.9
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 54.3
Min nTPM: 43.0
Sample A Female 54.3
Sample B Female 43.0
Sample C Male 50.5
Sample D Male 44.2
Periaqueductal gray
nTPM: 39.4
Samples: 3

Max nTPM: 44.0
Min nTPM: 36.6
Sample B Female 36.6
Sample C Male 44.0
Sample D Male 37.6
Superior colliculi
nTPM: 50.9
Samples: 4

Max nTPM: 58.8
Min nTPM: 41.8
Sample A Female 58.8
Sample B Female 41.8
Sample C Male 54.6
Sample D Male 48.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 85.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.7
Samples: 4

Max nTPM: 89.6
Min nTPM: 82.7
Sample A Male 85.4
Sample B Male 82.7
Sample C Female 89.6
Sample D Female 85.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70528408 Antisense, RP_050623_02_E06, Mouse strain C57BL/6J (56 days, male) 1.2

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