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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:146.6 nTPM
HPA Brain:81.8 nTPM
GTEx:146.6 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:152.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 66.0
1981 Female, age 72, midline 85.1
2194 Female, age 79, both hemispheres 66.0
2816 Male, age 47, midline 65.2
2565 Male, age 75, midline 57.3
2048 Male, age 55, midline 56.4
Cervical spinal cord, dorsal horn
nTPM: 81.4
2296 Male, age 66, both hemispheres 126.2
2173 Female, age 72, unknown 110.1
2069 Male, age 47, both hemispheres 81.2
1877 Male, age 55, unknown 65.3
2297 Male, age 75, both hemispheres 55.0
2721 Male, age 90, both hemispheres 50.5
Cervical spinal cord, ventral horn
nTPM: 81.8
2098 Female, age 72, unknown 102.3
2809 Male, age 90, both hemispheres 92.7
2068 Male, age 55, unknown 84.3
2480 Male, age 75, both hemispheres 75.6
2820 Female, age 79, both hemispheres 72.6
2295 Male, age 66, both hemispheres 63.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 146.6
Samples: 159

Max nTPM: 252.1
Min nTPM: 62.0
Std nTPM: 42.0
Median nTPM: 147.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 252.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 250.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 244.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 243.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 242.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 234.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 231.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 230.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 224.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 216.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 212.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 209.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 208.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 206.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 206.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 199.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 196.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 195.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 194.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 194.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 193.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 192.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 192.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 189.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 188.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 185.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 185.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 181.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 178.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 177.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 176.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 176.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 174.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 174.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 174.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 174.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 173.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 172.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 171.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 171.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 171.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 168.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 168.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 167.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 166.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 166.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 166.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 166.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 165.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 165.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 165.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 164.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 164.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 163.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 162.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 162.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 162.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 162.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 161.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 160.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 160.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 158.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 158.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 158.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 157.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 157.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 156.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 156.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 156.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 155.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 155.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 154.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 154.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 153.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 152.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 149.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 149.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 149.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 147.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 147.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 147.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 145.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 143.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 143.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 143.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 143.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 142.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 142.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 142.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 140.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 139.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 138.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 138.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 135.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 134.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 134.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 133.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 133.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 133.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 131.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 131.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 129.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 128.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 128.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 124.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 124.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 121.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 120.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 120.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 120.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 119.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 119.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 118.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 118.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 117.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 117.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 117.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 117.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 117.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 116.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 115.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 114.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 113.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 113.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 113.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 113.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 111.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 110.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 109.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 108.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 104.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 103.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 99.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 98.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 97.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 96.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 96.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 96.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 90.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 90.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 90.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 88.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 86.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 85.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 83.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 83.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 80.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 80.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 77.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 76.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 75.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 71.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 68.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 66.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 62.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 75.1
FF:10181-103D1 60 years, female 82.4
FF:10159-103A6 76 years, female 67.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 131.1
Samples: 4

Max nTPM: 138.1
Min nTPM: 122.7
Sample A Female 130.9
Sample B Female 132.6
Sample C Male 122.7
Sample D Male 138.1
Ventral spinal cord
nTPM: 152.8
Samples: 4

Max nTPM: 177.5
Min nTPM: 136.1
Sample A Female 156.4
Sample B Female 136.1
Sample C Male 141.3
Sample D Male 177.5

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