MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.8 nTPM
HPA Brain:180.4 nTPM
GTEx:60.8 nTPM
FANTOM5:1218.9 Scaled Tags Per Million
Pig:214.2 nTPM
Mouse:293.9 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 180.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 160.3
1833 Male, age 53, unknown 183.8
2586 Male, age 75, left hemisphere 174.5
1827 Male, age 72, unknown 171.4
2019 Male, age 18, unknown 167.6
1870 Female, age 42, unknown 167.3
2666 Male, age 74, left hemisphere 160.3
1830 Male, age 51, unknown 148.6
2219 Male, age 76, both hemispheres 147.5
2411 Female, age 72, unknown 146.8
2828 Female, age 72, unknown 135.6
Dorsal raphe nucleus
nTPM: 152.7
1828 Male, age 53, unknown 163.7
2750 Male, age 76, both hemispheres 162.9
2016 Female, age 72, unknown 162.5
2047 Male, age 72, unknown 152.5
2298 Female, age 72, unknown 121.7
Inferior colliculus
nTPM: 162.5
2849 Male, age 72, unknown 179.5
1890 Male, age 53, unknown 168.7
1848 Female, age 42, unknown 163.5
2097 Female, age 72, unknown 138.2
Median raphe nucleus
nTPM: 155.4
2220 Male, age 76, midline 155.4
Periaquaductal grey, anterior
nTPM: 137.1
1947 Male, age 18, unknown 160.3
1795 Male, age 51, unknown 131.0
2502 Female, age 75, unknown 120.0
Periaquaductal grey, dorsal
nTPM: 176.0
2850 Male, age 76, both hemispheres 219.4
1831 Male, age 72, unknown 185.7
1840 Male, age 53, unknown 161.3
2464 Female, age 72, unknown 137.5
Periaquaductal grey, lateral
nTPM: 180.4
2140 Male, age 76, both hemispheres 190.3
2272 Male, age 74, both hemispheres 180.4
2053 Male, age 18, unknown 170.4
Pretectal area
nTPM: 166.5
2407 Male, age 75, both hemispheres 209.5
1817 Female, age 42, unknown 178.4
2667 Female, age 75, unknown 176.6
1815 Male, age 53, unknown 167.1
1944 Female, age 72, unknown 164.4
2007 Male, age 72, unknown 164.4
1816 Male, age 51, unknown 161.4
2825 Male, age 18, unknown 158.8
2316 Male, age 76, right hemisphere 155.7
2273 Male, age 74, both hemispheres 154.9
2224 Female, age 72, unknown 139.8
Red nucleus
nTPM: 178.1
2584 Male, age 75, left hemisphere 216.2
1865 Male, age 51, unknown 190.3
1821 Female, age 72, unknown 186.3
2823 Male, age 76, right hemisphere 182.0
1904 Male, age 53, unknown 181.3
2725 Female, age 75, unknown 179.6
2588 Male, age 74, left hemisphere 177.3
2769 Male, age 72, unknown 173.9
2503 Female, age 72, unknown 164.8
1954 Female, age 42, unknown 162.7
2227 Male, age 72, unknown 162.5
2785 Male, age 18, unknown 160.0
Substantia nigra
nTPM: 157.2
2583 Male, age 75, right hemisphere 217.1
2590 Female, age 75, unknown 172.8
2699 Male, age 18, unknown 169.4
1889 Female, age 72, unknown 161.9
2409 Female, age 72, unknown 161.9
1851 Male, age 51, unknown 149.9
1916 Female, age 42, unknown 138.9
2665 Male, age 74, both hemispheres 136.5
1941 Male, age 53, unknown 133.3
2241 Male, age 72, unknown 130.7
Superior colliculus
nTPM: 161.3
1895 Male, age 76, right hemisphere 198.3
1913 Female, age 42, unknown 173.4
2664 Male, age 75, both hemispheres 170.3
1839 Male, age 51, unknown 168.9
1995 Male, age 72, unknown 167.0
2587 Male, age 74, left hemisphere 155.3
2668 Female, age 75, unknown 151.7
2261 Male, age 18, unknown 145.8
1796 Male, age 53, unknown 143.7
2087 Female, age 72, unknown 138.5
Ventral tegmental area
nTPM: 154.6
2218 Male, age 76, both hemispheres 172.8
1942 Male, age 51, unknown 162.2
2021 Male, age 53, unknown 161.7
2223 Female, age 72, unknown 150.1
1915 Female, age 42, unknown 141.7
2410 Female, age 72, unknown 139.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 60.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.8
Samples: 139

Max nTPM: 136.0
Min nTPM: 21.1
Std nTPM: 16.8
Median nTPM: 59.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 136.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 98.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 98.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 98.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 97.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 94.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 90.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 88.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 86.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 83.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 82.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1218.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1218.9
FF:10158-103A5 76 years, female 1218.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 214.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 190.8
Samples: 4

Max nTPM: 215.5
Min nTPM: 167.2
Sample A Female 167.2
Sample B Female 204.8
Sample C Male 175.8
Sample D Male 215.5
Midbrain
nTPM: 200.5
Samples: 4

Max nTPM: 214.5
Min nTPM: 191.3
Sample A Female 214.5
Sample B Female 200.4
Sample C Male 191.3
Sample D Male 195.9
Periaqueductal gray
nTPM: 214.2
Samples: 3

Max nTPM: 217.7
Min nTPM: 212.0
Sample B Female 212.8
Sample C Male 212.0
Sample D Male 217.7
Superior colliculi
nTPM: 193.0
Samples: 4

Max nTPM: 238.9
Min nTPM: 170.4
Sample A Female 170.4
Sample B Female 238.9
Sample C Male 181.8
Sample D Male 180.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 293.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 293.9
Samples: 4

Max nTPM: 312.7
Min nTPM: 279.6
Sample A Male 279.6
Sample B Male 297.5
Sample C Female 312.7
Sample D Female 285.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
340 Antisense, RP_Baylor_102725, Mouse strain C57BL/6J (56 days, male) 6.6
341 Antisense, RP_Baylor_102725, Mouse strain C57BL/6J (56 days, male) 6.0

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