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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:331.1 nTPM
GTEx:331.1 nTPM
FANTOM5:87.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011795
Squamous epithelial cells Not detected

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

331.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 331.1
Samples: 156

Max nTPM: 3134.6
Min nTPM: 26.9
Std nTPM: 362.6
Median nTPM: 235.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 3134.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2355.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1309.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1222.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1156.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1001.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 957.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 870.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 719.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 717.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 696.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 694.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 689.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 677.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 649.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 591.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 554.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 552.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 548.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 547.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 537.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 533.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 529.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 523.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 519.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 517.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 505.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 497.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 476.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 465.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 461.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 459.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 450.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 448.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 424.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 417.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 416.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 413.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 410.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 410.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 397.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 397.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 395.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 390.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 372.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 368.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 358.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 357.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 356.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 356.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 355.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 354.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 351.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 347.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 345.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 344.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 343.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 343.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 329.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 328.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 320.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 309.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 306.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 303.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 298.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 296.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 284.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 280.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 271.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 265.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 265.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 260.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 260.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 258.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 238.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 238.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 235.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 235.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 234.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 234.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 229.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 226.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 224.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 223.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 216.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 213.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 209.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 207.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 207.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 204.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 203.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 203.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 191.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 188.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 187.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 186.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 184.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 182.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 181.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 178.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 176.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 174.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 172.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 165.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 163.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 161.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 153.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 153.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 152.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 150.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 150.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 146.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 145.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 142.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 137.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 137.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 136.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 130.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 126.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 124.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 123.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 122.5
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 120.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 120.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 119.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 117.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 115.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 114.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 112.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 110.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 103.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 102.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 101.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 101.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 98.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 93.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 89.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 87.1
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 79.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 78.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 77.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 77.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 68.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 68.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 68.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 67.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 54.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 48.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 46.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 45.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 40.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 38.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 37.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 35.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 34.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 26.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

87.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 87.6
FF:10204-103F6 68 years, female 87.6

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