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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:90.1 nTPM
HPA Brain:80.7 nTPM
GTEx:90.1 nTPM
FANTOM5:28.9 Scaled Tags Per Million
Pig:303.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 67.1
2565 Male, age 75, midline 79.3
1981 Female, age 72, midline 71.9
2048 Male, age 55, midline 65.3
2194 Female, age 79, both hemispheres 61.5
2816 Male, age 47, midline 57.3
Cervical spinal cord, dorsal horn
nTPM: 63.2
2173 Female, age 72, unknown 81.1
1877 Male, age 55, unknown 68.0
2296 Male, age 66, both hemispheres 61.9
2721 Male, age 90, both hemispheres 57.8
2069 Male, age 47, both hemispheres 56.1
2297 Male, age 75, both hemispheres 54.1
Cervical spinal cord, ventral horn
nTPM: 80.7
2480 Male, age 75, both hemispheres 108.7
2295 Male, age 66, both hemispheres 83.9
2809 Male, age 90, both hemispheres 81.0
2098 Female, age 72, unknown 74.6
2820 Female, age 79, both hemispheres 68.2
2068 Male, age 55, unknown 67.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 90.1
Samples: 159

Max nTPM: 195.7
Min nTPM: 30.5
Std nTPM: 32.0
Median nTPM: 85.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 195.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 190.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 178.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 172.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 158.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 157.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 157.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 155.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 154.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 152.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 150.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 146.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 138.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 138.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 133.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 131.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 131.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 129.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 128.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 127.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 123.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 122.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 121.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 120.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 118.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 117.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 117.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 116.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 116.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 116.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 116.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 116.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 115.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 114.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 113.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 112.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 112.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 111.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 111.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 111.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 110.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 109.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 108.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 108.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 108.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 107.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 107.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 106.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 105.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 104.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 102.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 101.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 100.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 99.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 98.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 97.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 96.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 95.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 94.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 94.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 94.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 92.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 92.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 91.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 90.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 89.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 89.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 89.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 89.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 88.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 87.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 87.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 87.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 86.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 86.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 86.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 86.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 86.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 85.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 85.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 84.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 84.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 84.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 83.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 83.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 82.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 82.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 82.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 82.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 82.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 82.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 81.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 80.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 79.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 79.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 77.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 77.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 76.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 76.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 76.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 75.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 74.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 74.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 73.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 72.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 71.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 71.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 70.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 69.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 69.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 69.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 69.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 68.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 67.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 66.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 65.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 65.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 65.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 65.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 63.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 63.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 62.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 61.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 61.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 61.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 60.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 60.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 59.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 58.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 58.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 58.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 58.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 57.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 57.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 57.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 57.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 56.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 56.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 56.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 55.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 55.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 54.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 53.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 51.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 51.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 51.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 51.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 50.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 49.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 46.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 46.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 45.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 44.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 43.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 42.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 40.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 30.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 28.9
FF:10181-103D1 60 years, female 30.2
FF:10159-103A6 76 years, female 27.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 215.1
Samples: 4

Max nTPM: 254.8
Min nTPM: 176.3
Sample A Female 254.8
Sample B Female 177.1
Sample C Male 176.3
Sample D Male 252.2
Ventral spinal cord
nTPM: 303.9
Samples: 4

Max nTPM: 362.5
Min nTPM: 260.8
Sample A Female 291.1
Sample B Female 260.8
Sample C Male 301.2
Sample D Male 362.5

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