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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:125.7 nTPM
HPA Brain:97.6 nTPM
GTEx:125.7 nTPM
FANTOM5:235.0 Scaled Tags Per Million
Pig:33.0 nTPM
Mouse:46.2 nTPM
Allen mouse:7.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.6
Sample id Sample description nTPM
Amygdala
nTPM: 93.2
2514 Male, age 75, right hemisphere 102.4
2517 Female, age 94, left hemisphere 100.8
2695 Female, age 67, right hemisphere 94.6
2814 Male, age 76, right hemisphere 84.9
1987 Female, age 91, left hemisphere 83.1
Basal amygdala
nTPM: 95.1
2827 Female, age 67, right hemisphere 106.4
2110 Male, age 80, left hemisphere 97.0
2243 Female, age 91, right hemisphere 94.3
1955 Male, age 76, both hemispheres 92.1
2685 Female, age 94, left hemisphere 91.4
2609 Male, age 75, right hemisphere 89.1
Central amygdala
nTPM: 97.3
2701 Female, age 91, right hemisphere 107.0
2239 Male, age 80, left hemisphere 102.7
2515 Male, age 75, right hemisphere 95.6
2826 Female, age 94, left hemisphere 91.1
1905 Male, age 76, both hemispheres 90.4
Corticomedial amygdala
nTPM: 94.0
2240 Male, age 76, both hemispheres 99.4
2429 Female, age 94, left hemisphere 98.6
2829 Male, age 80, left hemisphere 94.2
2535 Female, age 67, right hemisphere 91.0
2428 Male, age 75, right hemisphere 90.9
2242 Female, age 91, right hemisphere 89.8
Lateral amygdala
nTPM: 97.6
2830 Female, age 67, right hemisphere 115.6
2256 Male, age 80, left hemisphere 111.4
2516 Male, age 75, right hemisphere 99.7
2255 Female, age 91, right hemisphere 97.7
1883 Male, age 76, both hemispheres 81.8
2534 Female, age 94, left hemisphere 79.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 125.7
Samples: 152

Max nTPM: 273.8
Min nTPM: 60.9
Std nTPM: 33.0
Median nTPM: 121.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 273.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 225.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 214.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 214.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 204.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 197.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 195.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 188.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 180.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 179.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 176.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 174.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 173.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 170.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 169.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 168.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 164.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 164.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 161.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 160.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 157.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 156.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 154.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 154.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 153.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 152.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 152.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 151.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 151.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 150.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 146.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 145.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 145.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 145.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 144.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 143.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 143.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 141.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 141.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 141.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 141.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 139.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 139.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 138.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 137.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 137.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 137.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 137.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 135.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 134.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 133.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 133.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 132.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 132.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 131.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 128.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 127.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 127.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 126.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 126.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 126.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 126.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 125.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 124.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 124.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 122.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 122.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 122.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 122.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 121.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 121.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 121.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 120.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 119.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 118.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 118.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 117.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 117.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 116.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 116.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 116.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 115.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 115.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 115.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 114.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 114.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 114.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 113.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 112.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 112.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 111.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 111.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 110.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 110.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 109.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 109.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 108.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 108.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 107.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 106.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 106.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 106.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 105.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 104.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 104.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 104.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 104.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 103.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 102.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 101.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 101.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 101.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 100.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 99.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 98.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 98.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 97.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 97.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 95.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 95.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 95.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 95.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 95.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 95.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 94.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 93.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 90.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 90.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 89.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 88.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 87.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 86.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 85.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 84.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 82.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 80.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 76.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 74.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 73.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 71.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 69.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 60.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 235.0
FF:10151-102I7 76 years, female 235.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.0
Pig sample Sample description nTPM
Amygdala
nTPM: 33.0
Samples: 4

Max nTPM: 37.8
Min nTPM: 27.2
Sample A Female 27.2
Sample B Female 37.8
Sample C Male 33.1
Sample D Male 33.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 46.3
Samples: 4

Max nTPM: 56.0
Min nTPM: 39.0
Sample A Male 39.0
Sample B Male 56.0
Sample C Female 44.1
Sample D Female 45.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.0
69407511 Antisense, RP_050414_01_G09, Mouse strain C57BL/6J (56 days, male) 7.0

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