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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:121.1 nTPM
HPA Brain:225.0 nTPM
GTEx:121.1 nTPM
FANTOM5:287.2 Scaled Tags Per Million
Pig:173.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 194.7
2565 Male, age 75, midline 205.9
1981 Female, age 72, midline 201.8
2194 Female, age 79, both hemispheres 201.0
2816 Male, age 47, midline 186.5
2048 Male, age 55, midline 178.5
Cervical spinal cord, dorsal horn
nTPM: 204.2
2296 Male, age 66, both hemispheres 245.8
2173 Female, age 72, unknown 237.2
2069 Male, age 47, both hemispheres 201.1
2297 Male, age 75, both hemispheres 197.9
1877 Male, age 55, unknown 176.8
2721 Male, age 90, both hemispheres 166.6
Cervical spinal cord, ventral horn
nTPM: 225.0
2480 Male, age 75, both hemispheres 283.5
2809 Male, age 90, both hemispheres 239.1
2295 Male, age 66, both hemispheres 235.7
2098 Female, age 72, unknown 217.8
2820 Female, age 79, both hemispheres 201.2
2068 Male, age 55, unknown 173.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 121.1
Samples: 159

Max nTPM: 194.0
Min nTPM: 63.9
Std nTPM: 25.5
Median nTPM: 119.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 194.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 182.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 177.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 177.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 172.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 172.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 171.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 168.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 168.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 167.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 163.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 162.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 160.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 160.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 159.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 158.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 156.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 155.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 153.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 153.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 151.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 148.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 147.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 147.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 147.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 143.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 142.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 142.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 141.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 141.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 140.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 140.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 140.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 139.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 139.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 138.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 137.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 137.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 137.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 136.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 135.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 135.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 135.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 135.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 135.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 135.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 134.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 134.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 133.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 133.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 132.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 129.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 128.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 128.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 128.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 128.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 128.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 127.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 127.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 126.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 126.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 125.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 125.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 125.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 124.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 124.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 124.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 123.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 123.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 123.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 123.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 122.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 122.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 121.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 120.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 119.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 119.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 119.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 119.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 118.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 118.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 118.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 118.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 118.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 117.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 116.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 116.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 115.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 115.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 114.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 114.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 113.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 113.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 113.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 112.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 112.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 112.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 112.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 111.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 110.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 110.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 109.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 109.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 108.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 108.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 107.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 107.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 107.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 107.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 107.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 106.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 106.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 106.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 105.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 104.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 104.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 104.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 103.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 103.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 102.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 102.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 102.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 102.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 102.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 101.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 101.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 101.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 100.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 98.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 98.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 98.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 98.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 97.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 96.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 94.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 92.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 92.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 91.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 91.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 88.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 86.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 86.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 86.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 86.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 86.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 85.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 85.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 81.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 79.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 79.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 75.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 73.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 68.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 67.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 66.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 63.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

287.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 287.2
FF:10159-103A6 76 years, female 314.4
FF:10181-103D1 60 years, female 260.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 171.7
Samples: 4

Max nTPM: 175.1
Min nTPM: 168.6
Sample A Female 171.5
Sample B Female 175.1
Sample C Male 171.4
Sample D Male 168.6
Ventral spinal cord
nTPM: 173.7
Samples: 4

Max nTPM: 196.6
Min nTPM: 161.8
Sample A Female 163.8
Sample B Female 172.4
Sample C Male 161.8
Sample D Male 196.6

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