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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:541.2 nTPM
HPA Brain:295.7 nTPM
GTEx:541.2 nTPM
FANTOM5:966.3 Scaled Tags Per Million
Pig:946.7 nTPM
Mouse:728.9 nTPM
Allen mouse:11.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.7
Sample id Sample description nTPM
Amygdala
nTPM: 295.7
2514 Male, age 75, right hemisphere 329.3
2814 Male, age 76, right hemisphere 325.6
2695 Female, age 67, right hemisphere 316.5
1987 Female, age 91, left hemisphere 296.7
2517 Female, age 94, left hemisphere 210.1
Basal amygdala
nTPM: 240.0
2110 Male, age 80, left hemisphere 264.1
2609 Male, age 75, right hemisphere 257.6
2827 Female, age 67, right hemisphere 243.6
2243 Female, age 91, right hemisphere 240.4
1955 Male, age 76, both hemispheres 223.1
2685 Female, age 94, left hemisphere 211.0
Central amygdala
nTPM: 256.4
2826 Female, age 94, left hemisphere 309.2
1905 Male, age 76, both hemispheres 269.3
2515 Male, age 75, right hemisphere 249.8
2239 Male, age 80, left hemisphere 232.3
2701 Female, age 91, right hemisphere 221.4
Corticomedial amygdala
nTPM: 243.1
2829 Male, age 80, left hemisphere 302.7
2242 Female, age 91, right hemisphere 264.1
2240 Male, age 76, both hemispheres 257.4
2428 Male, age 75, right hemisphere 234.2
2429 Female, age 94, left hemisphere 226.8
2535 Female, age 67, right hemisphere 173.6
Lateral amygdala
nTPM: 241.5
2516 Male, age 75, right hemisphere 299.6
2830 Female, age 67, right hemisphere 297.0
1883 Male, age 76, both hemispheres 267.4
2534 Female, age 94, left hemisphere 218.3
2256 Male, age 80, left hemisphere 195.4
2255 Female, age 91, right hemisphere 171.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

541.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 541.2
Samples: 152

Max nTPM: 1080.8
Min nTPM: 269.4
Std nTPM: 132.3
Median nTPM: 533.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1080.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 992.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 970.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 927.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 847.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 842.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 807.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 797.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 748.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 739.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 729.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 721.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 712.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 708.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 704.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 701.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 688.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 667.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 665.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 663.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 658.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 655.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 651.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 650.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 636.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 631.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 631.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 628.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 625.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 624.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 622.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 621.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 619.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 616.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 614.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 614.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 612.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 610.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 609.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 607.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 605.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 604.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 602.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 602.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 602.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 596.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 590.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 588.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 588.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 587.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 583.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 573.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 569.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 567.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 566.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 566.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 565.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 563.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 563.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 559.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 558.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 554.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 548.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 547.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 546.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 546.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 545.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 544.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 542.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 542.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 541.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 540.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 538.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 535.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 535.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 534.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 531.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 530.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 529.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 527.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 525.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 520.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 517.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 515.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 513.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 513.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 509.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 505.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 505.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 504.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 502.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 499.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 498.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 498.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 495.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 495.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 493.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 490.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 489.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 482.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 481.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 477.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 473.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 467.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 464.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 456.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 455.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 452.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 450.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 449.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 448.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 448.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 447.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 445.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 444.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 443.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 443.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 443.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 442.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 441.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 435.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 432.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 429.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 425.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 423.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 423.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 418.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 417.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 417.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 412.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 409.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 405.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 404.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 401.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 397.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 394.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 392.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 389.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 389.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 385.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 382.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 380.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 378.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 375.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 370.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 346.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 342.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 340.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 340.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 329.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 321.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 269.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

966.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 966.3
FF:10151-102I7 76 years, female 966.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

946.7
Pig sample Sample description nTPM
Amygdala
nTPM: 946.7
Samples: 4

Max nTPM: 1230.5
Min nTPM: 798.0
Sample A Female 1230.5
Sample B Female 915.1
Sample C Male 798.0
Sample D Male 843.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

728.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 728.9
Samples: 4

Max nTPM: 744.5
Min nTPM: 699.6
Sample A Male 743.8
Sample B Male 744.5
Sample C Female 699.6
Sample D Female 727.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.7
2739 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 11.7
2740 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 4.5

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