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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:253.0 nTPM
HPA Brain:152.3 nTPM
GTEx:253.0 nTPM
FANTOM5:391.0 Scaled Tags Per Million
Pig:1023.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 128.9
1981 Female, age 72, midline 172.8
2048 Male, age 55, midline 147.3
2816 Male, age 47, midline 117.3
2194 Female, age 79, both hemispheres 117.1
2565 Male, age 75, midline 90.1
Cervical spinal cord, dorsal horn
nTPM: 152.3
2296 Male, age 66, both hemispheres 246.0
2173 Female, age 72, unknown 229.5
2069 Male, age 47, both hemispheres 140.1
1877 Male, age 55, unknown 129.7
2297 Male, age 75, both hemispheres 85.7
2721 Male, age 90, both hemispheres 82.8
Cervical spinal cord, ventral horn
nTPM: 137.2
2098 Female, age 72, unknown 178.5
2068 Male, age 55, unknown 162.0
2820 Female, age 79, both hemispheres 145.4
2809 Male, age 90, both hemispheres 128.3
2480 Male, age 75, both hemispheres 115.5
2295 Male, age 66, both hemispheres 93.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 253.0
Samples: 159

Max nTPM: 1005.3
Min nTPM: 51.8
Std nTPM: 106.7
Median nTPM: 244.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1005.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 548.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 488.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 450.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 425.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 417.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 411.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 407.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 404.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 404.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 402.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 382.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 382.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 381.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 377.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 368.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 367.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 367.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 363.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 353.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 350.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 350.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 347.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 346.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 345.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 337.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 334.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 329.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 328.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 327.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 326.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 324.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 318.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 316.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 316.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 316.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 315.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 314.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 310.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 309.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 307.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 304.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 299.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 298.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 297.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 296.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 294.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 292.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 290.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 288.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 287.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 287.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 284.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 282.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 277.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 277.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 275.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 275.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 274.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 274.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 272.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 271.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 269.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 266.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 262.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 261.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 260.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 258.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 258.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 257.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 256.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 255.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 254.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 253.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 253.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 248.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 247.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 247.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 245.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 244.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 244.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 242.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 241.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 240.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 240.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 239.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 239.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 239.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 237.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 233.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 232.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 230.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 229.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 229.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 229.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 226.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 222.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 222.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 218.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 215.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 214.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 211.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 210.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 206.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 206.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 202.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 200.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 200.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 199.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 199.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 196.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 191.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 191.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 188.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 188.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 187.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 185.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 184.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 184.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 181.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 180.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 173.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 170.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 170.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 169.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 169.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 168.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 167.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 167.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 166.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 164.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 164.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 164.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 160.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 160.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 160.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 156.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 154.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 153.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 152.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 150.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 149.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 145.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 139.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 137.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 134.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 130.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 123.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 122.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 119.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 111.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 97.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 85.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 84.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 75.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 75.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 71.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 51.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

391.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 391.0
FF:10181-103D1 60 years, female 426.6
FF:10159-103A6 76 years, female 355.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1023.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1023.1
Samples: 4

Max nTPM: 2018.3
Min nTPM: 112.3
Sample A Female 112.3
Sample B Female 1251.7
Sample C Male 2018.3
Sample D Male 710.2
Ventral spinal cord
nTPM: 329.6
Samples: 4

Max nTPM: 718.4
Min nTPM: 139.0
Sample A Female 139.0
Sample B Female 209.3
Sample C Male 718.4
Sample D Male 251.5

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