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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:232.3 nTPM
HPA:232.3 nTPM
GTEx:153.1 nTPM
FANTOM5:720.4 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.3
overview
Male, age 65
Small intestine sample 232
nTPM: 115.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 268.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 167.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 377.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 153.1
Samples: 187

Max nTPM: 569.5
Min nTPM: 41.5
Std nTPM: 91.1
Median nTPM: 133.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 569.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 535.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 446.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 429.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 425.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 389.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 388.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 366.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 364.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 341.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 341.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 330.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 326.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 311.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 293.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 289.4
GTEX-1192X-2526-SM-59868 50-59 years, male 284.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 274.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 264.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 263.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 257.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 256.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 248.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 241.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 227.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 225.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 217.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 214.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 211.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 210.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 210.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 210.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 209.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 208.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 205.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 197.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 195.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 194.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 192.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 191.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 191.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 190.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 189.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 187.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 186.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 185.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 184.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 183.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 182.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 180.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 177.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 176.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 174.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 173.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 172.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 171.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 171.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 170.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 169.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 168.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 166.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 166.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 163.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 163.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 162.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 162.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 161.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 161.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 159.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 159.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 158.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 158.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 157.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 154.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 153.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 149.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 149.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 149.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 148.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 148.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 147.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 146.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 146.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 146.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 146.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 145.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 144.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 142.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 142.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 139.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 139.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 137.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 134.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 133.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 132.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 128.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 128.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 128.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 128.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 126.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 126.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 125.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 125.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 124.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 123.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 120.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 119.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 118.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 117.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 116.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 116.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 114.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 114.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 113.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 113.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 113.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 110.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 110.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 110.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 110.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 109.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 109.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 109.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 109.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 108.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 107.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 105.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 103.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 102.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 100.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 100.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 98.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 98.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 98.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 97.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 94.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 93.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 91.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 90.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 89.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 88.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 88.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 87.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 87.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 87.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 86.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 85.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 82.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 82.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 82.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 81.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 81.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 80.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 79.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 79.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 75.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 73.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 73.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 73.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 71.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 69.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 68.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 68.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 67.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 67.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 67.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 66.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 66.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 64.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 63.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 63.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 63.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 62.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 62.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 58.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 57.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 55.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 54.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 47.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 47.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 47.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 46.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 46.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 45.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 45.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 44.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 41.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

720.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 720.4
FF:10024-101D6 15,40,85 years, mixed 720.4

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