We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
UNC119
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • UNC119
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: High
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1133.1 nTPM
GTEx:1133.1 nTPM
FANTOM5:583.4 Scaled Tags Per Million
Pig:962.0 nTPM
Mouse:3536.5 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA041912
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer High
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1133.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1133.1
Samples: 105

Max nTPM: 2186.2
Min nTPM: 282.2
Std nTPM: 380.5
Median nTPM:
352_1 62 years, male 2186.2
218_1 71 years, female 1985.6
319_1 81 years, male 1962.7
163_1 78 years, male 1741.1
172_1 72 years, female 1673.3
321_1 62 years, female 1671.7
355_1 70 years, female 1658.9
354_1 81 years, female 1655.5
316_1 62 years, male 1640.1
394_1 75 years, female 1611.4
377_1 82 years, female 1601.9
356_1 87 years, female 1550.0
447_1 81 years, male 1540.8
320_1 89 years, female 1540.6
375_1 74 years, female 1540.3
386_1 76 years, male 1521.8
237_1 82 years, male 1510.3
292_1 71 years, male 1489.1
425_1 59 years, female 1487.3
389_1 86 years, female 1485.4
376_1 75 years, female 1475.3
350_1 84 years, female 1463.2
379_1 60 years, male 1461.4
349_1 83 years, male 1457.5
243_1 75 years, male 1457.3
406_1 79 years, male 1432.8
286_1 68 years, female 1431.3
335_1 73 years, female 1428.6
322_1 76 years, male 1423.2
99_1 64 years, male 1418.5
35_1 74 years, female 1415.9
503_1 68 years, male 1408.1
318_1 68 years, male 1403.6
6_1 73 years, female 1402.4
405_1 91 years, male 1352.6
353_1 82 years, female 1336.0
404_1 82 years, female 1318.5
229_1 69 years, female 1307.8
384_1 83 years, male 1304.9
246_1 77 years, male 1295.6
480_1 63 years, male 1295.6
153_1 70 years, female 1291.2
177_1 74 years, male 1264.7
293_1 68 years, female 1264.3
251_1 78 years, male 1263.5
347_1 72 years, male 1257.4
189_1 76 years, male 1245.5
517_1 88 years, male 1224.9
317_1 60 years, male 1181.9
526_1 61 years, male 1160.6
266_1 85 years, male 1121.7
217_1 76 years, male 1119.9
115_1 83 years, male 1114.0
506_1 65 years, male 1098.5
396_1 62 years, male 1079.3
291_1 76 years, male 1076.1
348_1 84 years, male 1062.2
126_1 63 years, male 1054.5
9_1 66 years, female 1053.5
324_1 76 years, male 1044.1
351_1 91 years, male 1043.2
265_1 87 years, male 1039.3
468_1 89 years, male 1018.4
264_1 73 years, female 1014.5
499_1 55 years, female 985.8
42_1 85 years, male 976.0
295_1 61 years, female 973.9
452_1 88 years, female 952.5
17_1 71 years, male 947.6
518_1 75 years, female 939.7
18_1 88 years, male 924.6
173_1 67 years, male 912.1
142_1 61 years, female 880.9
4_1 88 years, female 880.7
81_1 67 years, male 879.2
2_1 77 years, female 878.6
254_1 77 years, female 875.6
145_1 84 years, male 856.0
137_1 83 years, male 845.8
313_1 79 years, female 827.5
120_1 70 years, female 818.8
117_1 61 years, male 811.6
311_1 78 years, male 767.2
415_1 77 years, female 756.0
32_1 67 years, male 753.5
139_1 64 years, female 743.8
315_1 62 years, female 740.2
41_1 94 years, female 734.5
307_1 66 years, female 723.2
162_1 79 years, female 719.5
109_1 81 years, female 704.0
466_1 57 years, female 701.0
288_1 66 years, female 700.0
414_1 84 years, female 699.6
43_1 64 years, female 677.4
495_1 57 years, female 658.8
119_1 70 years, female 657.6
314_1 67 years, male 597.6
308_1 70 years, female 537.6
89_1 63 years, male 518.4
149_1 88 years, male 455.7
413_1 59 years, female 435.6
490_1 67 years, female 421.6
501_1 88 years, male 388.2
491_1 89 years, female 282.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

583.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 583.4
FF:10030-101E3 24-65 years, mixed 583.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

962.0
Pig sample Sample description nTPM
Retina
nTPM: 962.0
Samples: 4

Max nTPM: 1184.5
Min nTPM: 871.9
Sample A Female 885.2
Sample B Female 871.9
Sample C Male 1184.5
Sample D Male 906.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3536.5
Mouse sample Sample description nTPM
Retina
nTPM: 3536.5
Samples: 4

Max nTPM: 3917.5
Min nTPM: 2994.6
Sample A Male 3623.8
Sample B Male 3610.0
Sample C Female 3917.5
Sample D Female 2994.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org