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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:392.3 nTPM
HPA Brain:798.3 nTPM
GTEx:392.3 nTPM
FANTOM5:265.6 Scaled Tags Per Million
Pig:1766.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

798.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 657.5
2194 Female, age 79, both hemispheres 841.8
1981 Female, age 72, midline 838.9
2048 Male, age 55, midline 656.4
2816 Male, age 47, midline 500.3
2565 Male, age 75, midline 450.2
Cervical spinal cord, dorsal horn
nTPM: 680.2
2173 Female, age 72, unknown 1083.6
2721 Male, age 90, both hemispheres 733.8
2297 Male, age 75, both hemispheres 711.3
2069 Male, age 47, both hemispheres 594.0
1877 Male, age 55, unknown 509.0
2296 Male, age 66, both hemispheres 449.5
Cervical spinal cord, ventral horn
nTPM: 798.3
2295 Male, age 66, both hemispheres 1026.9
2068 Male, age 55, unknown 879.7
2820 Female, age 79, both hemispheres 851.0
2480 Male, age 75, both hemispheres 703.8
2809 Male, age 90, both hemispheres 680.5
2098 Female, age 72, unknown 647.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

392.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 392.3
Samples: 159

Max nTPM: 1115.1
Min nTPM: 118.9
Std nTPM: 154.7
Median nTPM: 364.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1115.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 901.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 898.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 869.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 834.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 801.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 743.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 717.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 688.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 651.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 618.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 616.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 593.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 589.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 581.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 562.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 560.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 554.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 554.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 553.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 541.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 534.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 525.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 521.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 520.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 516.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 506.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 503.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 503.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 501.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 497.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 492.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 491.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 487.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 485.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 478.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 467.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 464.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 462.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 461.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 450.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 446.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 444.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 437.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 434.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 425.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 424.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 423.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 421.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 420.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 419.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 418.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 417.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 415.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 414.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 413.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 409.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 404.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 402.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 402.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 401.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 399.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 396.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 396.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 395.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 393.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 387.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 387.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 386.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 386.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 382.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 381.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 379.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 376.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 370.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 369.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 368.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 366.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 364.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 364.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 362.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 360.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 357.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 351.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 350.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 350.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 346.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 344.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 343.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 341.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 340.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 338.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 337.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 334.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 334.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 331.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 330.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 330.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 329.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 324.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 324.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 322.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 319.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 316.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 316.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 315.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 313.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 308.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 303.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 303.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 302.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 302.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 301.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 300.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 299.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 298.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 294.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 293.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 292.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 290.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 287.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 286.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 285.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 283.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 280.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 277.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 276.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 272.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 272.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 265.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 263.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 261.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 260.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 260.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 255.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 254.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 251.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 250.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 250.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 248.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 246.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 246.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 245.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 244.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 242.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 239.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 235.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 234.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 232.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 231.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 225.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 219.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 205.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 203.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 186.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 157.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 147.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 137.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 118.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

265.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 265.6
FF:10181-103D1 60 years, female 399.7
FF:10159-103A6 76 years, female 131.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1766.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1191.8
Samples: 4

Max nTPM: 1332.6
Min nTPM: 991.0
Sample A Female 1327.6
Sample B Female 1116.0
Sample C Male 991.0
Sample D Male 1332.6
Ventral spinal cord
nTPM: 1766.5
Samples: 4

Max nTPM: 1907.9
Min nTPM: 1609.2
Sample A Female 1667.7
Sample B Female 1907.9
Sample C Male 1881.0
Sample D Male 1609.2

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