MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.1 nTPM
HPA Brain:147.4 nTPM
GTEx:15.1 nTPM
FANTOM5:192.4 Scaled Tags Per Million
Pig:60.0 nTPM
Mouse:25.0 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 147.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.6
1830 Male, age 51, unknown 165.0
1833 Male, age 53, unknown 149.9
1870 Female, age 42, unknown 145.1
2411 Female, age 72, unknown 129.8
2019 Male, age 18, unknown 128.0
2666 Male, age 74, left hemisphere 120.3
2828 Female, age 72, unknown 104.8
2219 Male, age 76, both hemispheres 97.9
2586 Male, age 75, left hemisphere 87.6
1827 Male, age 72, unknown 87.1
Dorsal raphe nucleus
nTPM: 89.0
2750 Male, age 76, both hemispheres 127.3
2016 Female, age 72, unknown 99.6
1828 Male, age 53, unknown 91.9
2047 Male, age 72, unknown 68.0
2298 Female, age 72, unknown 58.2
Inferior colliculus
nTPM: 90.8
1890 Male, age 53, unknown 102.7
2849 Male, age 72, unknown 96.1
1848 Female, age 42, unknown 87.5
2097 Female, age 72, unknown 76.9
Median raphe nucleus
nTPM: 85.3
2220 Male, age 76, midline 85.3
Periaquaductal grey, anterior
nTPM: 79.3
2502 Female, age 75, unknown 92.2
1947 Male, age 18, unknown 87.8
1795 Male, age 51, unknown 57.8
Periaquaductal grey, dorsal
nTPM: 80.3
2464 Female, age 72, unknown 95.0
2850 Male, age 76, both hemispheres 88.8
1831 Male, age 72, unknown 79.0
1840 Male, age 53, unknown 58.6
Periaquaductal grey, lateral
nTPM: 83.5
2053 Male, age 18, unknown 89.7
2140 Male, age 76, both hemispheres 86.3
2272 Male, age 74, both hemispheres 74.4
Pretectal area
nTPM: 83.7
2316 Male, age 76, right hemisphere 106.5
1815 Male, age 53, unknown 105.3
2407 Male, age 75, both hemispheres 102.1
2825 Male, age 18, unknown 85.9
1817 Female, age 42, unknown 84.6
2007 Male, age 72, unknown 83.2
2667 Female, age 75, unknown 76.3
1944 Female, age 72, unknown 73.2
2224 Female, age 72, unknown 72.6
2273 Male, age 74, both hemispheres 71.0
1816 Male, age 51, unknown 59.5
Red nucleus
nTPM: 147.4
1865 Male, age 51, unknown 190.2
1904 Male, age 53, unknown 167.4
1821 Female, age 72, unknown 163.0
2503 Female, age 72, unknown 156.1
2769 Male, age 72, unknown 152.8
2785 Male, age 18, unknown 149.4
2227 Male, age 72, unknown 146.3
1954 Female, age 42, unknown 144.9
2823 Male, age 76, right hemisphere 142.2
2588 Male, age 74, left hemisphere 135.2
2725 Female, age 75, unknown 119.5
2584 Male, age 75, left hemisphere 101.9
Substantia nigra
nTPM: 106.2
2409 Female, age 72, unknown 144.9
2699 Male, age 18, unknown 125.6
2590 Female, age 75, unknown 112.0
1851 Male, age 51, unknown 109.9
2583 Male, age 75, right hemisphere 108.3
2241 Male, age 72, unknown 106.7
1889 Female, age 72, unknown 100.2
2665 Male, age 74, both hemispheres 92.6
1941 Male, age 53, unknown 85.2
1916 Female, age 42, unknown 76.9
Superior colliculus
nTPM: 107.8
1913 Female, age 42, unknown 170.2
1995 Male, age 72, unknown 153.1
1895 Male, age 76, right hemisphere 124.6
2587 Male, age 74, left hemisphere 114.7
1839 Male, age 51, unknown 111.6
2668 Female, age 75, unknown 106.6
2087 Female, age 72, unknown 80.3
1796 Male, age 53, unknown 79.9
2664 Male, age 75, both hemispheres 75.8
2261 Male, age 18, unknown 61.0
Ventral tegmental area
nTPM: 103.8
2223 Female, age 72, unknown 124.7
2410 Female, age 72, unknown 122.1
2218 Male, age 76, both hemispheres 98.1
2021 Male, age 53, unknown 97.0
1942 Male, age 51, unknown 92.3
1915 Female, age 42, unknown 88.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.1
Samples: 139

Max nTPM: 42.1
Min nTPM: 5.1
Std nTPM: 6.3
Median nTPM: 13.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 33.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 32.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 30.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 30.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 28.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 27.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 27.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 26.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 26.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 192.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 192.4
FF:10158-103A5 76 years, female 192.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.8
Samples: 4

Max nTPM: 93.7
Min nTPM: 41.3
Sample A Female 46.8
Sample B Female 41.3
Sample C Male 49.2
Sample D Male 93.7
Midbrain
nTPM: 60.0
Samples: 4

Max nTPM: 107.6
Min nTPM: 35.9
Sample A Female 107.6
Sample B Female 58.7
Sample C Male 37.8
Sample D Male 35.9
Periaqueductal gray
nTPM: 43.5
Samples: 3

Max nTPM: 49.4
Min nTPM: 33.9
Sample B Female 49.4
Sample C Male 33.9
Sample D Male 47.3
Superior colliculi
nTPM: 44.8
Samples: 4

Max nTPM: 55.6
Min nTPM: 30.5
Sample A Female 44.3
Sample B Female 30.5
Sample C Male 48.9
Sample D Male 55.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 26.2
Min nTPM: 23.4
Sample A Male 23.4
Sample B Male 25.7
Sample C Female 26.2
Sample D Female 24.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71735832 Antisense, RP_051010_03_C06, Mouse strain C57BL/6J (56 days, male) 1.1

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